MKRN2

General Information

Gene Name : MKRN2
Gene ID : ENSG00000075975.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MKRN2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MKRN2	ENSG00000075975.15	19.97	21.76	20.87	ENCSR000AEF
HepG2	MKRN2	ENSG00000075975.15	22.16	21.85	22.01	ENCSR985KAT
K562	MKRN2	ENSG00000075975.15	31.83	30.49	31.16	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
MKRN2	HepG2	CRISPR			BGHcLV24-41,BGHcLV24-42	BGHcLV24-1,BGHcLV24-2		NotSatisfied	ENCODE4
MKRN2	HepG2	CRISPR			BGHcLV24-43,BGHcLV24-44	BGHcLV24-1,BGHcLV24-2		NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MKRN2 is not avaliable on ENCORE database.

Proteins bound to RNA

MKRN2 RNA is bound by 13 proteins.

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eCLIP assay for MKRN2 is not avaliable on ENCORE database.

13 proteins are bound to MKRN2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	12598633	12598758	+	5'-UTR,CDS,intron-Proximal	5.67071	16.83003	HepG2	PRPF8
chr3	12623304	12623368	+	CDS,intron-Proximal	4.08122	13.62242	K562	PUM2
chr3	12610377	12610416	+	CDS,intron-Distal	3.73974	9.05969	K562	YBX3
chr3	12623841	12623917	+	3'-UTR	5.53584	8.34710	K562	AQR
chr3	12623847	12623902	+	3'-UTR	4.57071	8.11444	HepG2	SUB1
chr3	12598693	12598737	+	intron-Proximal	4.20636	7.80986	K562	PRPF8
chr3	12624315	12624392	+	3'-UTR	3.91943	7.48557	K562	IGF2BP1
chr3	12624874	12624919	+	3'-UTR	4.13667	7.12652	K562	UPF1
chr3	12611664	12611741	+	CDS	3.49691	6.76685	K562	YBX3
chr3	12623253	12623308	+	CDS,intron-Proximal	3.53220	6.71722	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 23 entries

eCLIP assay for MKRN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MKRN2 is not available on ENCORE database.
79 RBPs can affect the levels of MKRN2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MKRN2 is not available on ENCORE database.

79 RBPs can affect the gene expression of MKRN2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MKRN2	ENSG00000075975.11	666.69700	1151.95670	-0.78900	16.34360	15.06910	HepG2	PCBP1
MKRN2	ENSG00000075975.11	626.83490	1078.63700	-0.78310	15.02210	13.64820	HepG2	AUH
MKRN2	ENSG00000075975.11	2730.80380	1857.19650	0.55610	13.42640	12.10120	K562	DDX47
MKRN2	ENSG00000075975.11	746.40720	1172.15230	-0.65110	11.05520	10.10330	HepG2	PTBP1
MKRN2	ENSG00000075975.11	1974.15400	1087.26050	0.86040	11.03080	9.37170	K562	RPS19
MKRN2	ENSG00000075975.11	871.04110	1304.49850	-0.58270	9.69620	8.79490	HepG2	NELFE
MKRN2	ENSG00000075975.11	624.17760	1120.52690	-0.84410	9.78350	8.36540	HepG2	ASCC1
MKRN2	ENSG00000075975.11	292.14200	548.55270	-0.90900	9.60850	8.01820	HepG2	HNRNPM
MKRN2	ENSG00000075975.11	693.75230	1229.89830	-0.82600	9.12460	8.01350	HepG2	NCBP2
MKRN2	ENSG00000075975.11	2801.05970	2085.03720	0.42580	8.77480	7.84020	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MKRN2 is not available on ENCORE database.

1 RBPs can affect the splicing of MKRN2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	MKRN2	ENSG00000075975.11	chr3	+	12610347	12610502			12598585	12598675	12611569	12611751	0.06600	0.01030	0.08319	included	K562	AQR

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MKRN2

General Information

Functions

Localization

Domains (AlphaFold: MKRN2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MKRN2 is not avaliable on ENCORE database.

13 proteins are bound to MKRN2 RNA:

eCLIP assay for MKRN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MKRN2 is not available on ENCORE database.

79 RBPs can affect the gene expression of MKRN2 :

The Knockdown/knockout RNA-Seq assay for MKRN2 is not available on ENCORE database.

1 RBPs can affect the splicing of MKRN2 :

The Knockdown/knockout RNA-Seq assay for MKRN2 is not avaliable on ENCORE database.