FAM204A

General Information

Gene Name       : FAM204A
Gene ID             : ENSG00000165669.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM204A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM204AENSG00000165669.1358.0546.3452.20ENCSR000AEF
HepG2FAM204AENSG00000165669.1315.7736.2526.01ENCSR985KAT
K562FAM204AENSG00000165669.1332.2028.1030.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM204A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM204A RNA is bound by 11 proteins.  







eCLIP assay for FAM204A is not avaliable on ENCORE database.





11 proteins are bound to FAM204A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10120070314120070416-3'-UTR,CDS,intron-Distal3.870917.28307HepG2BCLAF1
chr10120070310120070423-3'-UTR,CDS,intron-Distal4.158714.37331K562GRWD1
chr10120070781120070847-3'-UTR,CDS,intron-Distal,intron-Proximal4.569823.35169HepG2U2AF2
chr10120070716120070827-3'-UTR,CDS,intron-Distal,intron-Proximal3.978375.96588K562ZNF622
chr10120070325120070392-3'-UTR,CDS,intron-Distal3.476063.95937K562UCHL5
chr10120070338120070425-3'-UTR,CDS,intron-Distal4.920636.81136K562ZNF622
chr10120101363120101449-5'-UTR,intron-Distal,intron-Proximal4.671885.24929K562ZNF622
chr10120101279120101357-5'-UTR,intron-Distal,intron-Proximal4.190923.43980K562ZNF622
chr10120095761120095895-CDS,intron-Distal5.7262012.29514K562UCHL5
chr10120095688120095800-CDS,intron-Distal,intron-Proximal4.507558.47938HepG2BCLAF1
chr10120095767120095825-CDS,intron-Distal4.261213.88696K562GRWD1
chr10120094625120094728-CDS,intron-Distal,intron-Proximal4.070587.14937K562ZNF622
chr10120095671120095783-CDS,intron-Distal,intron-Proximal4.163953.82843HepG2PPIG
chr10120095879120095927-CDS,intron-Distal3.698833.14999HepG2GRWD1
chr10120094633120094726-CDS,intron-Distal,intron-Proximal4.624835.03605K562PUM1
chr10120094622120094731-CDS,intron-Distal,intron-Proximal3.971645.56491HepG2BCLAF1
chr10120095067120095141-CDS,intron-Distal4.463873.98581K562PUM1
chr10120085656120085752-CDS,intron-Distal,intron-Proximal3.296364.62864K562ZNF622
chr10120070483120070599-intron-Distal3.779033.42844K562KHSRP
chr10120072023120072165-intron-Distal3.667716.19377K562KHSRP
chr10120095540120095672-intron-Distal,intron-Proximal3.166144.48980K562PRPF8
chr10120071673120071736-intron-Distal3.270604.21828HepG2TIAL1
chr10120085456120085512-intron-Distal4.652834.76003K562KHSRP
chr10120071674120071731-intron-Distal4.092634.23094K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM204A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM204A is not available on ENCORE database.

  • 34 RBPs can affect the levels of FAM204A.  








The Knockdown/knockout RNA-Seq assay for FAM204A is not available on ENCORE database.





34 RBPs can affect the gene expression of FAM204A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM204AENSG00000165669.9327.92060484.60740-0.563505.096404.21050HepG2AUH
FAM204AENSG00000165669.9241.54710436.11920-0.852405.478604.08390HepG2CCAR1
FAM204AENSG00000165669.9552.96100421.833000.390401.976201.43900HepG2DDX3X
FAM204AENSG00000165669.9164.51680259.05800-0.655003.313302.54850HepG2DNAJC21
FAM204AENSG00000165669.9135.53980256.72890-0.921507.773906.75260HepG2DNAJC2
FAM204AENSG00000165669.9579.67030384.970200.590403.890703.13720HepG2EIF4A3
FAM204AENSG00000165669.9191.31250374.81530-0.970205.680204.71730HepG2EIF4B
FAM204AENSG00000165669.9701.53710556.421300.334202.761902.16150HepG2ETF1
FAM204AENSG00000165669.9165.17570308.56820-0.901605.306204.43770HepG2GPKOW
FAM204AENSG00000165669.9246.84120343.94620-0.478602.181001.53890HepG2HNRNPF
FAM204AENSG00000165669.9598.02150388.542800.622004.439403.61150HepG2MAGOH
FAM204AENSG00000165669.9536.64740339.263900.661502.952202.22530HepG2RAVER1
FAM204AENSG00000165669.9200.07460291.47310-0.542802.506701.83300HepG2SF3B1
FAM204AENSG00000165669.9484.27670382.163400.341502.013501.52190HepG2TAF15
FAM204AENSG00000165669.9202.93990283.30310-0.481302.887602.31460HepG2TRIM56
FAM204AENSG00000165669.9140.06050340.20010-1.280303.791502.62560HepG2U2AF2
FAM204AENSG00000165669.9342.04460471.23400-0.462302.121401.39440HepG2UBE2L3
FAM204AENSG00000165669.9180.49660260.01740-0.526602.884002.27620HepG2UTP3
FAM204AENSG00000165669.9600.57550451.272900.412203.346302.73350K562AGGF1
FAM204AENSG00000165669.9592.06110469.567000.334301.907601.36100K562AKAP8L
FAM204AENSG00000165669.9427.72410627.25690-0.552405.323603.75140K562CPEB4
FAM204AENSG00000165669.9285.76800402.41370-0.493802.919802.11490K562CPSF6
FAM204AENSG00000165669.91279.203801040.417900.298002.497901.57210K562CELF1
FAM204AENSG00000165669.9904.04110649.013600.478005.764304.87510K562DDX47
FAM204AENSG00000165669.9259.59910390.73380-0.589903.251701.40910K562DDX51
FAM204AENSG00000165669.9538.76260413.012000.383402.423501.67680K562EIF3G
FAM204AENSG00000165669.9256.54040365.74560-0.511703.489402.16570K562EIF4B
FAM204AENSG00000165669.9596.86550438.429700.445002.245401.61790K562G3BP2
FAM204AENSG00000165669.9278.03540384.21460-0.466602.560601.79500K562GPKOW
FAM204AENSG00000165669.9565.81840391.301000.532002.766001.88260K562NAA15
FAM204AENSG00000165669.9487.42950352.132200.469002.725101.98160K562PRPF8
FAM204AENSG00000165669.9769.42290465.702000.724306.775805.96930K562PUS1
FAM204AENSG00000165669.9592.24510453.739600.384202.733102.14290K562RBM15
FAM204AENSG00000165669.9638.77910358.731900.832307.189505.85780K562RPS19
FAM204AENSG00000165669.9187.96560279.77970-0.573802.532801.56330K562SRFBP1
FAM204AENSG00000165669.9212.74670330.54110-0.635703.645702.53210K562TRIM56
FAM204AENSG00000165669.9604.30770469.525400.364003.077502.18660K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM204A is not available on ENCORE database.





11 RBPs can affect the splicing of FAM204A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM204AENSG00000165669.9chr10-1201012381201014391200957441200959351201017811201018320.263000.000160.07085includedK562SMNDC1
SEFAM204AENSG00000165669.9chr10-120101238120101439120095693120095935120101781120101832-0.339000.002540.04410excludedHepG2U2AF1
SEFAM204AENSG00000165669.9chr10-120101238120101439120095693120095935120101781120101832-0.273000.000920.02507excludedHepG2HNRNPK
SEFAM204AENSG00000165669.9chr10-1201012381201014601200955361200959351201017811201018320.355000.000490.05003includedHepG2DDX59
SEFAM204AENSG00000165669.9chr10-120101238120101439120095693120095935120101781120101832-0.394000.000410.00659excludedHepG2U2AF2
SEFAM204AENSG00000165669.9chr10-120094907120094938120094625120094725120095065120095153-0.103000.000040.00082excludedK562AQR
SEFAM204AENSG00000165669.9chr10-1201012381201014391200957441200959351201017811201018320.195000.000750.08688includedK562LARP4
SEFAM204AENSG00000165669.9chr10-120101238120101439120095693120095935120101781120101832-0.193000.003750.06528excludedK562U2AF1
SEFAM204AENSG00000165669.9chr10-1201012381201014391200956931200959351201017811201018320.314000.000010.00265includedK562HNRNPUL1
SEFAM204AENSG00000165669.9chr10-120101238120101439120095693120095935120101781120101832-0.334000.002270.08488excludedHepG2SF3B4
SEFAM204AENSG00000165669.9chr10-1201012381201014391200957441200959351201017811201018320.202000.003020.07689includedK562UTP18
SEFAM204AENSG00000165669.9chr10-1201012381201014391200956931200959351201017811201018320.291000.000020.00172includedK562HNRNPU
SEFAM204AENSG00000165669.9chr10-1201012381201014391200956931200959351201017811201018320.274000.001870.06841includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM204A is not avaliable on ENCORE database.