CPNE7

General Information

Gene Name : CPNE7
Gene ID : ENSG00000178773.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CPNE7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CPNE7	ENSG00000178773.14	10.44	11.89	11.16	ENCSR000AEF
HepG2	CPNE7	ENSG00000178773.14	0.14	0.01	0.08	ENCSR985KAT
K562	CPNE7	ENSG00000178773.14	22.78	26.31	24.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CPNE7 is not avaliable on ENCORE database.

Proteins bound to RNA

CPNE7 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for CPNE7 is not avaliable on ENCORE database.

43 proteins are bound to CPNE7 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	89645843	89645856	+	intron-Distal	6.12410	400.00000	K562	AGGF1
chr16	89647537	89647563	+	intron-Distal	5.47353	400.00000	K562	AGGF1
chr16	89647757	89647837	+	intron-Distal	6.15509	400.00000	K562	AGGF1
chr16	89646020	89646052	+	intron-Distal	6.11053	400.00000	K562	AGGF1
chr16	89645926	89645960	+	intron-Distal	6.52239	400.00000	K562	AGGF1
chr16	89645751	89645801	+	intron-Distal	5.88140	400.00000	K562	AGGF1
chr16	89647568	89647583	+	intron-Distal	5.40604	400.00000	K562	AGGF1
chr16	89645960	89645978	+	intron-Distal	6.24220	400.00000	K562	AGGF1
chr16	89645833	89645843	+	intron-Distal	6.43438	400.00000	K562	AGGF1
chr16	89647384	89647424	+	intron-Distal	6.07075	400.00000	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 296 entries

eCLIP assay for CPNE7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CPNE7 is not available on ENCORE database.
64 RBPs can affect the levels of CPNE7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CPNE7 is not available on ENCORE database.

64 RBPs can affect the gene expression of CPNE7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CPNE7	ENSG00000178773.10	1982.98650	1070.80710	0.88890	26.58340	24.76180	K562	DDX47
CPNE7	ENSG00000178773.10	747.99950	300.38960	1.31610	25.18390	22.75590	K562	EIF3G
CPNE7	ENSG00000178773.10	631.33030	1413.31570	-1.16260	20.46630	19.04230	K562	AQR
CPNE7	ENSG00000178773.10	262.63470	644.26650	-1.29460	18.99620	17.50880	K562	HNRNPC
CPNE7	ENSG00000178773.10	661.52250	1085.16840	-0.71410	12.29530	10.93610	K562	EIF2S2
CPNE7	ENSG00000178773.10	355.13890	672.86480	-0.92190	12.39500	10.75640	K562	POLR2G
CPNE7	ENSG00000178773.10	438.08660	877.23890	-1.00180	11.77070	10.05880	K562	PCBP3
CPNE7	ENSG00000178773.10	287.72150	624.54010	-1.11810	10.85960	9.36000	K562	PRPF8
CPNE7	ENSG00000178773.10	574.37200	967.74250	-0.75260	9.97780	7.86700	K562	HNRNPL
CPNE7	ENSG00000178773.10	1160.85380	535.14520	1.11710	9.75560	7.84690	K562	EIF3A
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CPNE7 is not available on ENCORE database.

12 RBPs can affect the splicing of CPNE7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CPNE7	ENSG00000178773.10	chr16	+	89662238	89662332			89661983	89662011	89662891	89663257	0.64000	0.00000	0.00000	included	K562	HNRNPL
SE	CPNE7	ENSG00000178773.10	chr16	+	89662241	89662332			89661774	89662011	89662891	89663253	-0.23600	0.00000	0.00020	excluded	K562	HNRNPU
MXE	CPNE7	ENSG00000178773.10	chr16	+	89657534	89657668	89660373	89660566	89657414	89657466	89661774	89662011	-0.62300	0.00000	0.00000	2included	K562	HNRNPL
MXE	CPNE7	ENSG00000178773.10	chr16	+	89657623	89657668	89660373	89660566	89657414	89657466	89661774	89662011	-0.70700	0.00000	0.00046	2included	K562	FXR1
MXE	CPNE7	ENSG00000178773.10	chr16	+	89657534	89657668	89660373	89660566	89657414	89657466	89661774	89662011	-0.45800	0.00000	0.00000	2included	K562	FXR1
SE	CPNE7	ENSG00000178773.10	chr16	+	89660370	89660566			89657534	89657668	89661774	89662011	0.42200	0.00001	0.00218	included	K562	HNRNPL
A5SS	CPNE7	ENSG00000178773.10	chr16	+	89662156	89662369			89662156	89662332	89662891	89663253	0.12500	0.00001	0.00888	longer	K562	NSUN2
SE	CPNE7	ENSG00000178773.10	chr16	+	89662179	89662332			89661774	89662011	89662891	89663257	-0.36300	0.00009	0.02833	excluded	K562	SAFB
MXE	CPNE7	ENSG00000178773.10	chr16	+	89657534	89657668	89660476	89660566	89657414	89657466	89661774	89662011	-0.36100	0.00010	0.00434	2included	K562	TARDBP
A3SS	CPNE7	ENSG00000178773.10	chr16	+	89653450	89653510			89653458	89653510	89653077	89653164	0.34700	0.00013	0.05084	longer	K562	FXR2

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CPNE7

General Information

Functions

Localization

Domains (AlphaFold: CPNE7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CPNE7 is not avaliable on ENCORE database.

43 proteins are bound to CPNE7 RNA:

eCLIP assay for CPNE7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CPNE7 is not available on ENCORE database.

64 RBPs can affect the gene expression of CPNE7 :

The Knockdown/knockout RNA-Seq assay for CPNE7 is not available on ENCORE database.

12 RBPs can affect the splicing of CPNE7 :

The Knockdown/knockout RNA-Seq assay for CPNE7 is not avaliable on ENCORE database.