BNIP1

General Information

Gene Name       : BNIP1
Gene ID             : ENSG00000113734.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BNIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BNIP1ENSG00000113734.1721.7720.9621.37ENCSR000AEF
HepG2BNIP1ENSG00000113734.179.9212.1811.05ENCSR985KAT
K562BNIP1ENSG00000113734.1719.1118.4118.76ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BNIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BNIP1 RNA is bound by 2 proteins.  







eCLIP assay for BNIP1 is not avaliable on ENCORE database.





2 proteins are bound to BNIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5172591097172591324+3'-UTR4.434189.04751K562UPF1
chr5172590781172590892+CDS3.836053.22721K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BNIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BNIP1 is not available on ENCORE database.

  • 47 RBPs can affect the levels of BNIP1.  








The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.





47 RBPs can affect the gene expression of BNIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BNIP1ENSG00000113734.1349.77740180.67710-1.859909.929208.66650HepG2EIF4B
BNIP1ENSG00000113734.13102.56660173.67640-0.759803.022702.32860HepG2G3BP1
BNIP1ENSG00000113734.13111.04450184.40590-0.731702.951002.03010HepG2G3BP2
BNIP1ENSG00000113734.1380.09310125.02170-0.642402.339201.77810HepG2HNRNPU
BNIP1ENSG00000113734.1392.34890177.57350-0.943203.737802.55380HepG2KHSRP
BNIP1ENSG00000113734.13119.92580188.35180-0.651302.277801.70170HepG2MATR3
BNIP1ENSG00000113734.13136.25500196.91270-0.531202.354101.79860HepG2PUM1
BNIP1ENSG00000113734.1386.33670192.94580-1.160206.111205.35990HepG2NELFE
BNIP1ENSG00000113734.13247.61480115.385101.101506.716505.63440HepG2SF3A3
BNIP1ENSG00000113734.13121.98480177.87250-0.544102.168701.53460HepG2SLBP
BNIP1ENSG00000113734.13118.58080183.15320-0.627202.655602.03930HepG2SRSF5
BNIP1ENSG00000113734.13101.58230169.31350-0.737003.337402.73030HepG2TAF15
BNIP1ENSG00000113734.13150.0583088.411400.763102.453901.51190HepG2UPF2
BNIP1ENSG00000113734.13194.9958098.794700.980805.740504.92910HepG2UTP3
BNIP1ENSG00000113734.13704.51110435.534700.693709.144208.18820K562AGGF1
BNIP1ENSG00000113734.13633.03350478.595800.403402.824401.82950K562AKAP8
BNIP1ENSG00000113734.13716.24440453.195800.660206.525005.48920K562AKAP8L
BNIP1ENSG00000113734.13626.00310492.715200.345301.878801.37760K562AQR
BNIP1ENSG00000113734.13600.37570475.515700.336302.421401.57140K562ATP5C1
BNIP1ENSG00000113734.13419.95710318.298400.399802.716502.07020K562DDX47
BNIP1ENSG00000113734.13669.18550487.657200.456404.368103.23160K562DKC1
BNIP1ENSG00000113734.13428.76990284.979700.589202.775201.95230K562EIF4A3
BNIP1ENSG00000113734.13110.71950174.26350-0.654402.370101.52860K562FTO
BNIP1ENSG00000113734.13509.27150259.978700.969904.265102.64660K562HNRNPA2B1
BNIP1ENSG00000113734.13312.48520179.973000.795904.691403.44950K562HNRNPM
BNIP1ENSG00000113734.13455.84520296.640900.619704.226103.24930K562HSPD1
BNIP1ENSG00000113734.13664.97480480.946200.467303.553002.60490K562KIF1C
BNIP1ENSG00000113734.13606.73400460.390200.398102.241801.30760K562MAK16
BNIP1ENSG00000113734.13703.44510538.782300.384602.679301.78850K562MBNL1
BNIP1ENSG00000113734.13596.56530377.648100.659504.081802.95320K562NAA15
BNIP1ENSG00000113734.13557.89980227.286801.295406.884005.10520K562PABPN1
BNIP1ENSG00000113734.13144.85330280.81190-0.955002.953102.09380K562PCBP3
BNIP1ENSG00000113734.13117.80330215.41600-0.870702.710601.91890K562POLR2G
BNIP1ENSG00000113734.13348.23450248.391100.487302.663901.86290K562PPIG
BNIP1ENSG00000113734.13527.59830270.099900.965804.033502.14720K562PPP1R8
BNIP1ENSG00000113734.13381.66320206.498800.886106.400705.26100K562PRPF8
BNIP1ENSG00000113734.13466.48280598.60240-0.359802.658201.71690K562PUM2
BNIP1ENSG00000113734.13874.44130449.430100.9602012.2244011.12960K562PUS1
BNIP1ENSG00000113734.13693.84760437.915000.663907.652606.69670K562RBM15
BNIP1ENSG00000113734.13150.07410332.17330-1.1463010.183108.02640K562NELFE
BNIP1ENSG00000113734.13495.42280207.789901.253405.642903.72280K562SF1
BNIP1ENSG00000113734.13520.38810238.742401.124005.132003.28480K562SNRNP200
BNIP1ENSG00000113734.13530.03960285.498800.892503.423501.77420K562SUPT6H
BNIP1ENSG00000113734.13432.47120303.070000.512902.714301.63420K562U2AF1
BNIP1ENSG00000113734.13494.74980313.074900.660105.988304.81090K562U2AF2
BNIP1ENSG00000113734.13135.28340211.62900-0.645602.632801.64190K562UCHL5
BNIP1ENSG00000113734.13725.51040455.691200.670803.054601.66920K562UTP18
BNIP1ENSG00000113734.13434.13730555.08670-0.354602.126101.37980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.





11 RBPs can affect the splicing of BNIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.087000.003320.05494excludedHepG2U2AF1
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.159000.000180.09031excludedK562UTP3
SEBNIP1ENSG00000113734.13chr5+172573868172573961172571517172571632172581324172581416-0.122000.000010.00016excludedK562AQR
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.137000.000000.00002excludedK562PUS1
SEBNIP1ENSG00000113734.13chr5+172573868172573961172571444172571632172581324172581416-0.101000.000010.00033excludedK562U2AF1
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.115000.001830.04901excludedHepG2SF3A3
SEBNIP1ENSG00000113734.13chr5+172573868172573961172571517172571632172581324172581416-0.054000.004350.06484excludedK562U2AF2
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.111000.001130.04138excludedK562HNRNPU
SEBNIP1ENSG00000113734.13chr5+172578568172578697172573868172573961172581324172581416-0.080000.005470.09778excludedK562RBM15
SEBNIP1ENSG00000113734.13chr5+1725785681725786971725738681725739611725813241725814160.617000.000000.00000includedK562HNRNPC
SEBNIP1ENSG00000113734.13chr5+172573868172573961172571444172571632172581324172581416-0.111000.001770.03077excludedK562HNRNPC
A3SSBNIP1ENSG00000113734.13chr5+1725738411725739611725738681725739611725714441725716320.161000.000000.00000longerK562AQR
MXEBNIP1ENSG00000113734.13chr5+1725738681725739611725813241725814161725715171725716321725857461725858480.122000.000800.033531includedK562TAF15
MXEBNIP1ENSG00000113734.13chr5+1725813241725814161725857461725858481725714441725716321725869351725870540.128000.000680.042691includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BNIP1 is not avaliable on ENCORE database.