ATPAF1

General Information

Gene Name : ATPAF1
Gene ID : ENSG00000123472.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATPAF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATPAF1	ENSG00000123472.12	38.57	46.02	42.30	ENCSR000AEF
HepG2	ATPAF1	ENSG00000123472.12	44.09	55.67	49.88	ENCSR985KAT
K562	ATPAF1	ENSG00000123472.12	27.36	30.23	28.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATPAF1 is not avaliable on ENCORE database.

Proteins bound to RNA

ATPAF1 RNA is bound by 9 proteins.

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eCLIP assay for ATPAF1 is not avaliable on ENCORE database.

9 proteins are bound to ATPAF1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	47124364	47124410	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.05402	20.86620	K562	TROVE2
chr1	47130930	47130938	-	5'-UTR,CDS,intron-Distal	6.57767	17.27574	K562	TROVE2
chr1	47130927	47130930	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.57767	17.27574	K562	TROVE2
chr1	47133909	47134015	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.11738	13.13184	HepG2	DDX3X
chr1	47100498	47100600	-	3'-UTR,intron-Distal	5.13667	8.00788	K562	UPF1
chr1	47098472	47098547	-	3'-UTR,intron-Distal	4.44553	7.43423	K562	CPSF6
chr1	47133793	47133909	-	CDS,intron-Distal,intron-Proximal	4.18576	6.67587	HepG2	DDX3X
chr1	47100976	47101097	-	3'-UTR,intron-Distal,intron-Proximal	4.57876	6.09204	K562	YBX3
chr1	47133793	47134026	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.80356	5.14253	HepG2	GRWD1
chr1	47130796	47130921	-	intron-Distal,intron-Proximal	4.17691	3.85435	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for ATPAF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATPAF1 is not available on ENCORE database.
71 RBPs can affect the levels of ATPAF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.

71 RBPs can affect the gene expression of ATPAF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATPAF1	ENSG00000123472.8	384.73840	1573.99790	-2.03250	114.32570	111.79840	HepG2	PUM1
ATPAF1	ENSG00000123472.8	317.62930	946.15880	-1.57470	41.09880	37.64250	HepG2	YBX3
ATPAF1	ENSG00000123472.8	971.52690	1664.97860	-0.77720	22.34590	20.85130	HepG2	SUCLG1
ATPAF1	ENSG00000123472.8	885.88830	1545.38010	-0.80280	19.44110	17.65000	HepG2	EIF4G1
ATPAF1	ENSG00000123472.8	977.86200	1617.70440	-0.72620	17.47820	16.16350	HepG2	PCBP1
ATPAF1	ENSG00000123472.8	1060.27870	1706.09770	-0.68630	15.85340	14.57730	HepG2	RECQL
ATPAF1	ENSG00000123472.8	2116.67680	1396.29490	0.60010	15.13520	14.12960	HepG2	SSB
ATPAF1	ENSG00000123472.8	1031.46710	1646.02400	-0.67430	14.98580	13.90940	HepG2	PTBP1
ATPAF1	ENSG00000123472.8	1207.87610	1831.90880	-0.60090	12.58770	11.58900	HepG2	NELFE
ATPAF1	ENSG00000123472.8	808.85090	1452.82940	-0.84490	12.52360	11.12720	HepG2	SF3B1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 79 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.

3 RBPs can affect the splicing of ATPAF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATPAF1	ENSG00000123472.8	chr1	-	47119488	47119539	47118252	47118300	47123798	47123861	-0.31000	0.00000	0.00012	excluded	K562	SF3B4
SE	ATPAF1	ENSG00000123472.8	chr1	-	47119488	47119539	47118252	47118300	47123798	47123861	0.11500	0.00001	0.00030	included	HepG2	SRSF1
SE	ATPAF1	ENSG00000123472.8	chr1	-	47110832	47110928	47098408	47101642	47118252	47118300	0.11800	0.00021	0.00716	included	HepG2	SRSF1
SE	ATPAF1	ENSG00000123472.8	chr1	-	47129504	47129595	47124358	47124409	47130927	47131036	0.06900	0.00567	0.05150	included	K562	AQR

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATPAF1

General Information

Functions

Localization

Domains (AlphaFold: ATPAF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATPAF1 is not avaliable on ENCORE database.

9 proteins are bound to ATPAF1 RNA:

eCLIP assay for ATPAF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.

71 RBPs can affect the gene expression of ATPAF1 :

The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.

3 RBPs can affect the splicing of ATPAF1 :

The Knockdown/knockout RNA-Seq assay for ATPAF1 is not avaliable on ENCORE database.