TBX18

General Information

Gene Name       : TBX18
Gene ID             : ENSG00000112837.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBX18)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBX18ENSG00000112837.160.020.020.02ENCSR000AEF
HepG2TBX18ENSG00000112837.160.050.000.03ENCSR985KAT
K562TBX18ENSG00000112837.1612.7315.3314.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBX18 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBX18 RNA is bound by 8 proteins.  







eCLIP assay for TBX18 is not avaliable on ENCORE database.





8 proteins are bound to TBX18 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68547267585472769-5'-UTR,intron-Distal3.760084.80676K562RBM15
chr68545774985457801-CDS,intron-Distal3.406787.65255K562YBX3
chr68544658185446662-CDS,intron-Distal3.833463.25872K562IGF2BP1
chr68547002885470075-CDS,intron-Distal,intron-Proximal4.351883.43980K562ZNF622
chr68544698885447043-CDS,intron-Distal3.806633.05875K562RBM15
chr68546629885466426-CDS,intron-Distal,intron-Proximal3.151534.07440K562PRPF8
chr68545765185457749-CDS,intron-Distal4.482356.03393K562YBX3
chr68546654385466603-CDS,intron-Distal,intron-Proximal3.957163.28461K562BUD13
chr68547380585473889-CDS,intron-Distal3.954833.28989K562RBM15
chr68545377585453916-intron-Distal,intron-Proximal3.012783.11628K562KHSRP
chr68545851085458643-intron-Distal3.284943.28806K562KHSRP
chr68545267885452743-intron-Distal3.855033.42844K562KHSRP
chr68547246885472554-intron-Distal,intron-Proximal3.715596.46304K562SF3B4
chr68546625585466345-intron-Distal,intron-Proximal3.579383.68839K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBX18 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBX18 is not available on ENCORE database.

  • 17 RBPs can affect the levels of TBX18.  








The Knockdown/knockout RNA-Seq assay for TBX18 is not available on ENCORE database.





17 RBPs can affect the gene expression of TBX18 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBX18ENSG00000112837.12778.25500598.833400.378002.638301.48980K562AARS
TBX18ENSG00000112837.12573.84570778.11010-0.439303.771902.85660K562CPSF6
TBX18ENSG00000112837.12534.14690691.98260-0.373503.327901.99070K562EIF2S1
TBX18ENSG00000112837.12963.04460756.012900.349102.994402.25160K562EIF2S2
TBX18ENSG00000112837.12425.26130539.97110-0.344502.126301.42180K562EIF3G
TBX18ENSG00000112837.12464.36970592.72620-0.352102.551201.45910K562EIF4B
TBX18ENSG00000112837.12773.68770568.818500.443702.915601.75500K562FKBP4
TBX18ENSG00000112837.12740.206501007.59520-0.444902.292201.60100K562GRSF1
TBX18ENSG00000112837.12811.676001068.27380-0.396302.325301.36640K562HNRNPL
TBX18ENSG00000112837.12459.24420626.79600-0.448702.602201.70270K562HNRNPM
TBX18ENSG00000112837.12506.19140787.51810-0.637604.728603.23550K562IGF2BP2
TBX18ENSG00000112837.12658.78900825.99230-0.326302.347601.50390K562MATR3
TBX18ENSG00000112837.12586.33460865.07440-0.561105.067303.90060K562PPIG
TBX18ENSG00000112837.12422.43620587.55470-0.476002.889201.96210K562PSIP1
TBX18ENSG00000112837.12587.55690771.07500-0.392102.791901.94780K562RBM22
TBX18ENSG00000112837.12482.95880681.04620-0.495904.541303.43540K562SF3B4
TBX18ENSG00000112837.12620.93610797.82960-0.361602.317201.66670K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBX18 is not available on ENCORE database.





3 RBPs can affect the splicing of TBX18 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBX18ENSG00000112837.12chr6-8545215385452266854482148544830985453978854540430.126000.000440.04246includedK562XRCC6
SETBX18ENSG00000112837.12chr6-8545215385452266854482148544830985453978854541120.065000.000580.00768includedK562AQR
SETBX18ENSG00000112837.12chr6-8545215385452266854482148544830985453978854540430.051000.000770.05463includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBX18 is not avaliable on ENCORE database.