RP11-506B6.6

General Information

Gene Name       : RP11-506B6.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-506B6.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-506B6.6 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RP11-506B6.6 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RP11-506B6.6 is not avaliable on ENCORE database.






NO known proteins are bound to RP11-506B6.6 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RP11-506B6.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-506B6.6 is not available on ENCORE database.

  • 19 RBPs can affect the levels of RP11-506B6.6.  








The Knockdown/knockout RNA-Seq assay for RP11-506B6.6 is not available on ENCORE database.





19 RBPs can affect the gene expression of RP11-506B6.6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-506B6.6ENSG00000226440.345.8246010.867302.076003.473102.26300K562CCAR1
RP11-506B6.6ENSG00000226440.3253.22570117.308301.110006.838204.48290K562CKAP4
RP11-506B6.6ENSG00000226440.351.0871012.169502.069605.299103.33950K562DHX30
RP11-506B6.6ENSG00000226440.3288.55630129.035401.161005.981003.40340K562HNRNPA0
RP11-506B6.6ENSG00000226440.334.0104089.16350-1.390504.311003.13350K562HNRNPM
RP11-506B6.6ENSG00000226440.392.37080146.98790-0.670202.429901.68060K562HSPD1
RP11-506B6.6ENSG00000226440.3224.98220131.219100.777702.789901.36370K562ILF2
RP11-506B6.6ENSG00000226440.3261.27880142.762500.871904.210303.03460K562KRR1
RP11-506B6.6ENSG00000226440.350.3842019.080001.400803.144801.64260K562LARP7
RP11-506B6.6ENSG00000226440.348.67950108.94340-1.162202.400601.49190K562PABPN1
RP11-506B6.6ENSG00000226440.361.77940129.58490-1.068702.812701.35980K562PPP1R8
RP11-506B6.6ENSG00000226440.32.0786017.27710-3.055202.595701.31730K562RBM25
RP11-506B6.6ENSG00000226440.358.17990149.44530-1.361004.312001.63970K562DROSHA
RP11-506B6.6ENSG00000226440.344.07060121.56130-1.463802.802901.49010K562SFPQ
RP11-506B6.6ENSG00000226440.334.5436011.962901.529802.568501.35650K562SLBP
RP11-506B6.6ENSG00000226440.369.10170142.24820-1.041604.448302.67810K562SSRP1
RP11-506B6.6ENSG00000226440.347.7623018.063001.402702.716501.78010K562TRIM56
RP11-506B6.6ENSG00000226440.337.7240012.435801.600902.925101.61940K562TROVE2
RP11-506B6.6ENSG00000226440.397.27290187.72070-0.948502.575001.42090K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-506B6.6 is not available on ENCORE database.





2 RBPs can affect the splicing of RP11-506B6.6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRP11-506B6.6ENSG00000226440.3chr6+112670365112670523112670394112670523112668493112668609-0.065000.000010.01079shorterK562CPSF6
A3SSRP11-506B6.6ENSG00000226440.3chr6+1126703651126705231126703941126705231126684931126686090.181000.000010.00010longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-506B6.6 is not avaliable on ENCORE database.