MIR940

General Information

Gene Name       : MIR940
Gene ID             : ENSG00000284346.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MIR940)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MIR940ENSG00000284346.10.000.000.00ENCSR000AEF
HepG2MIR940ENSG00000284346.10.000.000.00ENCSR985KAT
K562MIR940ENSG00000284346.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MIR940 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MIR940 RNA is bound by 6 proteins.  







eCLIP assay for MIR940 is not avaliable on ENCORE database.





6 proteins are bound to MIR940 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1623191262319154+intron-Distal3.214553.72472HepG2DGCR8
chr1623217742321829+intron-Distal6.4302422.74946HepG2DGCR8
chr1623196822319740+intron-Distal4.480089.37786HepG2DGCR8
chr1623196842319773+intron-Distal3.408029.86633K562DGCR8
chr1623220672322093+intron-Distal4.829405.30083K562DGCR8
chr1623187002318908+intron-Distal,intron-Proximal3.352743.50009K562CSTF2T
chr1623213392321421+intron-Distal4.215506.68663HepG2DROSHA
chr1623196942319744+intron-Distal3.941753.82910K562NONO
chr1623220492322146+intron-Distal4.133266.87113HepG2DROSHA
chr1623185612318651+intron-Distal3.408794.35339HepG2CSTF2T
chr1623187992318906+intron-Distal,intron-Proximal3.212635.68177HepG2CSTF2T
chr1623216772321700+intron-Distal3.660884.55278K562DGCR8
chr1623217882321829+intron-Distal7.0973625.26001K562DGCR8
chr1623187382318796+intron-Distal4.163674.10339HepG2CSTF2T
chr1623191222319164+intron-Distal5.215194.38825K562DROSHA
chr1623212892321323+intron-Distal4.516055.51133HepG2DGCR8
chr1623213722321392+intron-Distal4.288774.69797HepG2DGCR8
chr1623196762319772+intron-Distal5.013456.87001HepG2NKRF
chr1623212882321368+intron-Distal5.3998110.12417K562DROSHA
chr1623216392321741+intron-Distal,intron-Proximal5.093466.55621HepG2DROSHA
chr1623220532322115+intron-Distal5.4439411.93196HepG2DGCR8
chr1623201432320190+intron-Distal4.651465.40176HepG2DGCR8
chr1623214602321525+intron-Distal5.5551411.93196HepG2DGCR8
chr1623217212321752+intron-Distal4.580655.11833K562DGCR8
chr1623217722321788+intron-Distal5.357945.67221K562DGCR8
chr1623214292321460+intron-Distal4.470174.92660HepG2DGCR8
chr1623188212318909+intron-Distal,intron-Proximal4.715503.37829HepG2DROSHA
chr1623222272322265+intron-Distal4.497893.48031HepG2DGCR8
chr1623196802319775+intron-Distal3.771669.66394HepG2DROSHA
chr1623185042318573+intron-Distal4.400903.25012HepG2FKBP4
chr1623216512321728+intron-Distal,intron-Proximal5.6475714.31686HepG2DGCR8
chr1623214212321526+intron-Distal5.226997.01251HepG2DROSHA
chr1623196802319753+intron-Distal4.699766.34856K562DROSHA
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MIR940 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MIR940 is not available on ENCORE database.

  • 2 RBPs can affect the levels of MIR940.  








The Knockdown/knockout RNA-Seq assay for MIR940 is not available on ENCORE database.





2 RBPs can affect the gene expression of MIR940 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MIR940ENSG00000260778.217.563903.595602.288202.115901.55390HepG2EIF4A3
MIR940ENSG00000260778.221.784705.773401.915702.263701.78940HepG2SSB
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MIR940 is not available on ENCORE database.






No RBPs affect the alternative splcing events of MIR940 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for MIR940 is not avaliable on ENCORE database.