LINC00923

General Information

Gene Name : LINC00923
Gene ID : ENSG00000251209.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LINC00923)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LINC00923	ENSG00000251209.8	0.00	0.00	0.00	ENCSR000AEF
HepG2	LINC00923	ENSG00000251209.8	0.16	0.16	0.16	ENCSR985KAT
K562	LINC00923	ENSG00000251209.8	4.46	4.66	4.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LINC00923 is not avaliable on ENCORE database.

Proteins bound to RNA

LINC00923 RNA is bound by 7 proteins.

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eCLIP assay for LINC00923 is not avaliable on ENCORE database.

7 proteins are bound to LINC00923 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	98298817	98298838	-	intron-Distal	4.81081	14.52639	K562	EIF4G2
chr15	98298787	98298817	-	intron-Distal	4.77474	13.70562	K562	EIF4G2
chr15	98378837	98378968	-	intron-Distal	5.73920	10.00047	K562	EIF4G2
chr15	98400138	98400219	-	intron-Distal	3.53870	5.91893	K562	AGGF1
chr15	98417214	98417368	-	CDS,intron-Distal,intron-Proximal	4.68267	5.65349	K562	RBM15
chr15	98400166	98400273	-	intron-Distal	3.94829	5.57983	K562	HNRNPL
chr15	98298778	98298839	-	intron-Distal	4.01018	5.48330	K562	UPF1
chr15	98402466	98402543	-	intron-Distal	4.18209	4.39969	K562	TARDBP
chr15	98320779	98320860	-	intron-Distal	4.56476	3.89080	K562	EXOSC5
chr15	98375713	98375797	-	intron-Distal	3.97838	3.87294	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 12 entries

eCLIP assay for LINC00923 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LINC00923 is not available on ENCORE database.
3 RBPs can affect the levels of LINC00923.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.

3 RBPs can affect the gene expression of LINC00923 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LINC00923	ENSG00000251209.3	21.82770	61.30450	-1.48980	3.70700	3.03560	K562	RBM15
LINC00923	ENSG00000251209.3	62.13290	29.00980	1.09870	2.67090	1.87600	K562	MTPAP
LINC00923	ENSG00000251209.3	40.89850	82.99780	-1.02100	2.49650	1.72250	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.

1 RBPs can affect the splicing of LINC00923 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	LINC00923	ENSG00000251209.3	chr15	-	98352221	98352311			98285851	98286713	98417182	98417235	0.84500	0.00001	0.00777	included	K562	PUM2

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LINC00923

General Information

Functions

Localization

Domains (AlphaFold: LINC00923)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LINC00923 is not avaliable on ENCORE database.

7 proteins are bound to LINC00923 RNA:

eCLIP assay for LINC00923 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.

3 RBPs can affect the gene expression of LINC00923 :

The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.

1 RBPs can affect the splicing of LINC00923 :

The Knockdown/knockout RNA-Seq assay for LINC00923 is not avaliable on ENCORE database.