LINC00923

General Information

Gene Name       : LINC00923
Gene ID             : ENSG00000251209.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00923)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00923ENSG00000251209.80.000.000.00ENCSR000AEF
HepG2LINC00923ENSG00000251209.80.160.160.16ENCSR985KAT
K562LINC00923ENSG00000251209.84.464.664.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00923 is not avaliable on ENCORE database.



Proteins bound to RNA

  • LINC00923 RNA is bound by 7 proteins.  







eCLIP assay for LINC00923 is not avaliable on ENCORE database.





7 proteins are bound to LINC00923 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr159841721498417368-CDS,intron-Distal,intron-Proximal4.682675.65349K562RBM15
chr159837883798378968-intron-Distal5.7392010.00047K562EIF4G2
chr159840021998400283-intron-Distal3.053573.81025K562AGGF1
chr159840013898400219-intron-Distal3.538705.91893K562AGGF1
chr159829877898298839-intron-Distal4.010185.48330K562UPF1
chr159837181898371900-intron-Distal3.208503.14999K562EXOSC5
chr159840016698400273-intron-Distal3.948295.57983K562HNRNPL
chr159837571398375797-intron-Distal3.978383.87294K562TARDBP
chr159829878798298817-intron-Distal4.7747413.70562K562EIF4G2
chr159832077998320860-intron-Distal4.564763.89080K562EXOSC5
chr159829881798298838-intron-Distal4.8108114.52639K562EIF4G2
chr159840246698402543-intron-Distal4.182094.39969K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00923 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00923 is not available on ENCORE database.

  • 3 RBPs can affect the levels of LINC00923.  








The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.





3 RBPs can affect the gene expression of LINC00923 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00923ENSG00000251209.362.1329029.009801.098702.670901.87600K562MTPAP
LINC00923ENSG00000251209.340.8985082.99780-1.021002.496501.72250K562PUF60
LINC00923ENSG00000251209.321.8277061.30450-1.489803.707003.03560K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00923 is not available on ENCORE database.





1 RBPs can affect the splicing of LINC00923 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC00923ENSG00000251209.3chr15-9835222198352311982858519828671398417182984172350.845000.000010.00777includedK562PUM2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00923 is not avaliable on ENCORE database.