LINC00884

General Information

Gene Name       : LINC00884
Gene ID             : ENSG00000233058.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00884)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00884ENSG00000233058.11.331.291.31ENCSR000AEF
HepG2LINC00884ENSG00000233058.10.020.020.02ENCSR985KAT
K562LINC00884ENSG00000233058.10.480.300.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00884 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00884 RNA is bound by 3 proteins.  







eCLIP assay for LINC00884 is not avaliable on ENCORE database.





3 proteins are bound to LINC00884 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3194212521194212663+intron-Distal6.8365133.23968HepG2DROSHA
chr3194212208194212275+intron-Distal7.5607725.31536K562DROSHA
chr3194212667194212711+intron-Distal5.119137.25108K562RBFOX2
chr3194212523194212667+intron-Distal7.0940233.15510K562RBFOX2
chr3194212663194212716+intron-Distal5.4089010.83946HepG2DROSHA
chr3194212351194212412+intron-Distal6.7054630.87489K562DROSHA
chr3194212663194212707+intron-Distal7.5073125.31536K562DROSHA
chr3194212512194212557+intron-Distal8.6951952.63742K562DROSHA
chr3194211962194212039+intron-Distal5.241367.70517K562RBFOX2
chr3194212519194212654+intron-Distal6.0522118.03905HepG2RBFOX2
chr3194212557194212663+intron-Distal8.36783138.43873K562DROSHA
chr3194212524194212704+intron-Distal8.1036743.33610K562DDX6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00884 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00884 is not available on ENCORE database.

  • 13 RBPs can affect the levels of LINC00884.  








The Knockdown/knockout RNA-Seq assay for LINC00884 is not available on ENCORE database.





13 RBPs can affect the gene expression of LINC00884 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00884ENSG00000233058.19.068600.943003.265402.016001.39700HepG2HNRNPF
LINC00884ENSG00000233058.123.894300.926204.689106.658405.65470HepG2SRSF7
LINC00884ENSG00000233058.18.7585029.38320-1.746202.280901.75760K562AGGF1
LINC00884ENSG00000233058.113.0583035.60750-1.447202.261601.37960K562CELF1
LINC00884ENSG00000233058.111.6403031.80970-1.450302.234401.63880K562DDX47
LINC00884ENSG00000233058.13.3115016.95700-2.356302.152101.40180K562FIP1L1
LINC00884ENSG00000233058.19.1839032.44500-1.820802.094101.38690K562KIF1C
LINC00884ENSG00000233058.15.0325025.47690-2.339902.472901.65030K562NAA15
LINC00884ENSG00000233058.137.6258014.136501.412202.133401.40190K562PCBP3
LINC00884ENSG00000233058.131.8869010.843301.556102.301301.57120K562POLR2G
LINC00884ENSG00000233058.137.4802010.563301.827003.713702.95530K562PTBP1
LINC00884ENSG00000233058.14.9779030.31590-2.606503.638103.02740K562PUS1
LINC00884ENSG00000233058.18.0988029.54380-1.867102.546101.97400K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00884 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LINC00884 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LINC00884 is not avaliable on ENCORE database.