LINC00431

General Information

Gene Name       : LINC00431
Gene ID             : ENSG00000225760.2
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00431)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00431ENSG00000225760.20.000.150.07ENCSR000AEF
HepG2LINC00431ENSG00000225760.21.100.080.59ENCSR985KAT
K562LINC00431ENSG00000225760.21.651.761.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00431 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00431 RNA is bound by 4 proteins.  







eCLIP assay for LINC00431 is not avaliable on ENCORE database.





4 proteins are bound to LINC00431 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13111636298111636342+intron-Distal3.950314.48570K562HNRNPL
chr13111636372111636495+intron-Distal3.380633.77708K562GTF2F1
chr13111635741111635857+intron-Distal,intron-Proximal4.480216.13339K562KHSRP
chr13111636353111636428+intron-Distal3.7036615.04071K562AGGF1
chr13111636517111636597+intron-Distal6.8686023.13703K562AGGF1
chr13111636379111636516+intron-Distal7.1471127.10803K562HNRNPL
chr13111642042111642150+intron-Distal3.157533.11628K562KHSRP
chr13111636537111636596+intron-Distal4.847095.41154K562HNRNPL
chr13111636428111636467+intron-Distal4.6909619.00617K562AGGF1
chr13111641969111642042+intron-Distal4.424994.72162K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00431 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00431 is not available on ENCORE database.

  • 10 RBPs can affect the levels of LINC00431.  








The Knockdown/knockout RNA-Seq assay for LINC00431 is not available on ENCORE database.





10 RBPs can affect the gene expression of LINC00431 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00431ENSG00000225760.148.6239016.493801.559602.560701.99130K562AQR
LINC00431ENSG00000225760.125.715304.356502.561303.249102.20760K562BCLAF1
LINC00431ENSG00000225760.130.861406.193302.316902.392801.58770K562BOP1
LINC00431ENSG00000225760.136.753009.067502.019003.300802.65710K562HNRNPC
LINC00431ENSG00000225760.124.843305.370202.209702.469401.59220K562KRR1
LINC00431ENSG00000225760.138.2362011.922401.681202.948202.18210K562NSUN2
LINC00431ENSG00000225760.150.8167022.257401.190902.404501.64560K562PUF60
LINC00431ENSG00000225760.128.112304.734602.569803.776602.57350K562SUPV3L1
LINC00431ENSG00000225760.148.5667019.535401.313802.733401.45380K562WRN
LINC00431ENSG00000225760.147.5378018.584201.354902.895702.00980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00431 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LINC00431 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LINC00431 is not avaliable on ENCORE database.