HOXC4

General Information

Gene Name : HOXC4
Gene ID : ENSG00000198353.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HOXC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HOXC4	ENSG00000198353.7	3.64	4.28	3.96	ENCSR000AEF
HepG2	HOXC4	ENSG00000198353.7	0.00	0.00	0.00	ENCSR985KAT
K562	HOXC4	ENSG00000198353.7	0.51	0.24	0.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HOXC4 is not avaliable on ENCORE database.

Proteins bound to RNA

HOXC4 RNA is bound by 4 proteins.

eCLIP assay for HOXC4 is not avaliable on ENCORE database.

4 proteins are bound to HOXC4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	54427785	54427808	+	intron-Distal	8.00175	38.13625	K562	DGCR8
chr12	54427802	54427818	+	intron-Distal	4.27870	3.76295	K562	LIN28B
chr12	54427771	54427802	+	intron-Distal	4.31993	3.76295	K562	LIN28B
chr12	54412250	54412310	+	intron-Distal	3.94464	3.43867	K562	CSTF2T
chr12	54427891	54427923	+	intron-Distal	4.70237	4.56242	K562	DGCR8
chr12	54427808	54427814	+	intron-Distal	7.87611	35.79064	K562	DGCR8
chr12	54427966	54428021	+	intron-Distal,intron-Proximal	4.90971	3.59041	K562	DROSHA
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for HOXC4 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for HOXC4 is not available on ENCORE database.
2 RBPs can affect the levels of HOXC4.

The Knockdown/knockout RNA-Seq assay for HOXC4 is not available on ENCORE database.

2 RBPs can affect the gene expression of HOXC4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HOXC4	ENSG00000273266.1	13.85820	0.00000	99999.99990	3.72200	2.12580	K562	SSRP1
HOXC4	ENSG00000198353.6	1.95160	15.30720	-2.97150	2.50460	1.81930	K562	UPF1
HOXC4	ENSG00000273266.1	23.56040	0.00000	99999.99990	6.90420	5.82670	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HOXC4

General Information

Functions

Localization

Domains (AlphaFold: HOXC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HOXC4 is not avaliable on ENCORE database.

4 proteins are bound to HOXC4 RNA:

eCLIP assay for HOXC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HOXC4 is not available on ENCORE database.

2 RBPs can affect the gene expression of HOXC4 :

The Knockdown/knockout RNA-Seq assay for HOXC4 is not available on ENCORE database.

No RBPs affect the alternative splcing events of HOXC4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for HOXC4 is not avaliable on ENCORE database.