FAM209A

General Information

Gene Name       : FAM209A
Gene ID             : ENSG00000124103.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM209A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM209AENSG00000124103.80.000.350.17ENCSR000AEF
HepG2FAM209AENSG00000124103.80.140.250.20ENCSR985KAT
K562FAM209AENSG00000124103.80.080.030.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM209A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM209A RNA is bound by 9 proteins.  







eCLIP assay for FAM209A is not avaliable on ENCORE database.





9 proteins are bound to FAM209A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr205509382655093902+3'-UTR,intron-Distal4.7955216.83921K562PABPC4
chr205509383055093866+3'-UTR,intron-Distal5.264997.22380HepG2SUB1
chr205509366855093715+3'-UTR,intron-Distal3.706343.66308K562UPF1
chr205509384755093898+3'-UTR,intron-Distal3.463275.35486K562UPF1
chr205509384155093888+3'-UTR,intron-Distal3.865623.54620HepG2LIN28B
chr205509347155093527+3'-UTR,intron-Distal4.4172515.27671HepG2SUB1
chr205509337355093521+3'-UTR,intron-Distal,intron-Proximal3.731078.82223K562NOLC1
chr205509367555093725+3'-UTR,intron-Distal5.2547617.53659K562PABPC4
chr205509339155093540+3'-UTR,intron-Distal,intron-Proximal5.021427.21030HepG2UPF1
chr205509373655093820+3'-UTR,intron-Distal3.165894.63930HepG2PABPN1
chr205509363155093646+3'-UTR,intron-Distal3.8106913.60526K562YBX3
chr205509361455093631+3'-UTR,intron-Distal3.7863414.00943K562YBX3
chr205509360155093614+3'-UTR,intron-Distal3.400098.86025K562YBX3
chr205509352855093598+3'-UTR,intron-Distal3.596579.09662K562YBX3
chr205509383955093885+3'-UTR,intron-Distal5.672679.64995K562LIN28B
chr205509383755093874+3'-UTR,intron-Distal4.276855.13745K562YBX3
chr205509374755093839+3'-UTR,intron-Distal5.0725714.08080K562LIN28B
chr205509341455093471+3'-UTR,intron-Distal,intron-Proximal5.0109925.79661HepG2SUB1
chr205509336355093408+3'-UTR,intron-Proximal4.401216.03393K562YBX3
chr205509334855093413+3'-UTR,intron-Proximal4.8794712.61077K562PABPC4
chr205509337055093414+3'-UTR,intron-Proximal3.204845.53410HepG2SUB1
chr205509334855093416+3'-UTR,intron-Proximal3.407134.32261K562IGF2BP2
chr205509212055092283+CDS,intron-Proximal3.586178.10268HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM209A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM209A is not available on ENCORE database.

  • 5 RBPs can affect the levels of FAM209A.  








The Knockdown/knockout RNA-Seq assay for FAM209A is not available on ENCORE database.





5 RBPs can affect the gene expression of FAM209A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM209AENSG00000124103.811.717201.687502.795601.978201.53300HepG2SRFBP1
FAM209AENSG00000124103.810.455000.823403.666301.964901.42570HepG2U2AF1
FAM209AENSG00000124103.884.913302.506105.0824018.4022017.05510K562AQR
FAM209AENSG00000124103.817.907702.133003.069502.856402.25120K562HNRNPC
FAM209AENSG00000124103.838.735501.921004.333607.211405.89020K562PUF60
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM209A is not available on ENCORE database.






No RBPs affect the alternative splcing events of FAM209A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for FAM209A is not avaliable on ENCORE database.