CTD-2622I13.3

General Information

Gene Name : CTD-2622I13.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2622I13.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2622I13.3 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2622I13.3 RNA is bound by 12 proteins.

eCLIP assay for CTD-2622I13.3 is not avaliable on ENCORE database.

12 proteins are bound to CTD-2622I13.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	4061935	4061976	-	intron-Distal	4.43345	4.72743	K562	NONO
chr19	4061667	4061744	-	intron-Distal	3.26684	6.88068	K562	EWSR1
chr19	4061668	4061709	-	intron-Distal	3.68822	4.48585	K562	NONO
chr19	4062003	4062068	-	intron-Distal	3.14448	5.92687	HepG2	FAM120A
chr19	4061505	4061581	-	intron-Distal,intron-Proximal	4.57824	25.98653	HepG2	CSTF2T
chr19	4062533	4062578	-	intron-Distal	4.55516	4.53722	K562	SLTM
chr19	4061525	4061553	-	intron-Distal,intron-Proximal	4.01087	7.15757	HepG2	NKRF
chr19	4061504	4061551	-	intron-Distal,intron-Proximal	4.26147	8.71496	K562	EWSR1
chr19	4062541	4062615	-	intron-Distal	3.66437	22.36844	HepG2	CSTF2T
chr19	4061515	4061573	-	intron-Distal,intron-Proximal	5.36062	15.42063	HepG2	FKBP4
chr19	4061509	4061551	-	intron-Distal,intron-Proximal	3.21599	3.94177	HepG2	FASTKD2
chr19	4062776	4062831	-	intron-Distal,intron-Proximal	3.10978	5.61910	HepG2	FASTKD2
chr19	4061518	4061558	-	intron-Distal,intron-Proximal	5.63965	8.11443	HepG2	FAM120A
chr19	4061661	4061754	-	intron-Distal	4.00850	7.56829	HepG2	HNRNPK
chr19	4061944	4061951	-	intron-Distal	3.76106	9.58042	HepG2	CSTF2T
chr19	4062790	4062823	-	intron-Distal,intron-Proximal	4.65064	8.89165	HepG2	FKBP4
chr19	4062544	4062596	-	intron-Distal	3.09649	3.03570	HepG2	NCBP2
chr19	4062546	4062601	-	intron-Distal	5.14065	8.79608	K562	NONO
chr19	4062548	4062615	-	intron-Distal	4.83814	20.61774	HepG2	FKBP4
chr19	4062393	4062469	-	intron-Distal	4.28161	8.40323	K562	NONO
chr19	4062469	4062517	-	intron-Distal	4.23511	8.10961	K562	EWSR1
chr19	4062361	4062387	-	intron-Distal	5.40090	8.12542	HepG2	FKBP4
chr19	4062548	4062628	-	intron-Distal	4.54391	9.32002	K562	EWSR1
chr19	4062003	4062074	-	intron-Distal	4.55583	15.26501	HepG2	FKBP4
chr19	4062551	4062613	-	intron-Distal	4.85977	6.92157	K562	CSTF2T
chr19	4062757	4062818	-	intron-Distal,intron-Proximal	3.99282	16.76815	HepG2	CSTF2T
chr19	4061495	4061544	-	intron-Distal,intron-Proximal	4.77851	6.16396	K562	NONO
chr19	4062336	4062362	-	intron-Distal	3.94175	3.07008	K562	NONO
chr19	4061689	4061724	-	intron-Distal	3.75367	6.32706	HepG2	FAM120A
chr19	4061493	4061526	-	intron-Distal,intron-Proximal	3.29229	3.10946	HepG2	SFPQ
chr19	4061992	4062071	-	intron-Distal	3.31932	15.12673	HepG2	CSTF2T
chr19	4061520	4061561	-	intron-Distal,intron-Proximal	3.83378	3.26022	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2622I13.3 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CTD-2622I13.3 is not available on ENCORE database.
1 RBPs can affect the levels of CTD-2622I13.3.

The Knockdown/knockout RNA-Seq assay for CTD-2622I13.3 is not available on ENCORE database.

1 RBPs can affect the gene expression of CTD-2622I13.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2622I13.3	ENSG00000268670.1	32.61990	5.47530	2.57460	3.96720	3.28930	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2622I13.3

General Information

Functions

Localization

Domains (AlphaFold: CTD-2622I13.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2622I13.3 is not avaliable on ENCORE database.

12 proteins are bound to CTD-2622I13.3 RNA:

eCLIP assay for CTD-2622I13.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2622I13.3 is not available on ENCORE database.

1 RBPs can affect the gene expression of CTD-2622I13.3 :

The Knockdown/knockout RNA-Seq assay for CTD-2622I13.3 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CTD-2622I13.3 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-2622I13.3 is not avaliable on ENCORE database.