CTD-2545M3.6

General Information

Gene Name       : CTD-2545M3.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2545M3.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2545M3.6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2545M3.6 RNA is bound by 20 proteins.  







eCLIP assay for CTD-2545M3.6 is not avaliable on ENCORE database.





20 proteins are bound to CTD-2545M3.6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195092037050920445+3'-UTR,CDS,intron-Proximal3.953908.13137K562EFTUD2
chr195092030850920349+CDS,intron-Distal,intron-Proximal3.593534.24993HepG2PPIG
chr195091973450919786+CDS,intron-Proximal3.524895.21025HepG2PPIG
chr195092026550920321+CDS,intron-Distal,intron-Proximal3.908235.85504K562SF3B4
chr195092043050920466+3'-UTR,CDS3.821258.84200K562PABPC4
chr195091960350919669+CDS,intron-Proximal3.9898514.31466K562SF3B4
chr195092039150920440+3'-UTR,CDS,intron-Proximal4.022297.92595K562SF3B4
chr195091969050919740+CDS3.252004.24648K562METAP2
chr195091965850919742+CDS3.548885.65938K562FXR2
chr195091986350919924+CDS,intron-Proximal3.636316.11658K562FXR2
chr195091965350919697+CDS3.968964.19763K562DDX24
chr195092029950920349+CDS,intron-Distal,intron-Proximal4.102333.37376HepG2LSM11
chr195091997450920026+CDS,intron-Proximal3.985295.64484HepG2PRPF8
chr195092043150920476+3'-UTR,CDS5.224957.06060HepG2PPIG
chr195091977450919786+CDS,intron-Proximal3.469455.07933K562DDX55
chr195091904650919080+CDS,intron-Distal5.098898.02646K562FMR1
chr195091975350919784+CDS5.136024.17466K562DDX24
chr195092040950920453+3'-UTR,CDS,intron-Proximal4.739255.79396K562DDX24
chr195092107850921273+3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.365253.71087K562METAP2
chr195092120850921254+3'-UTR,intron-Distal3.850194.49052K562DDX6
chr195091934850919475+intron-Distal3.905276.74053HepG2HNRNPK
chr195091947950919565+intron-Distal,intron-Proximal3.524353.84715HepG2HNRNPK
chr195092117950921215+3'-UTR,CDS,intron-Distal3.023584.34780K562ZNF622
chr195091912550919211+intron-Distal,intron-Proximal3.713114.44431K562BUD13
chr195091925750919547+intron-Distal4.5760422.15632HepG2DDX59
chr195091912350919237+intron-Distal,intron-Proximal5.890958.60433HepG2DDX59
chr195092119450921265+3'-UTR,CDS,intron-Distal3.808095.89818K562APOBEC3C
chr195091911050919267+intron-Distal,intron-Proximal3.919603.45219HepG2RBFOX2
chr195091938350919490+intron-Distal5.0581313.88387K562HNRNPK
chr195091935450919477+intron-Distal5.083437.38423HepG2PCBP2
chr195091925850919383+intron-Distal5.1219013.59325K562HNRNPK
chr195092109750921250+3'-UTR,CDS,intron-Distal,intron-Proximal3.153726.00978HepG2PPIG
chr195092107150921147+3'-UTR,CDS,intron-Distal,intron-Proximal3.907393.00996K562BUD13
chr195091956550919644+intron-Proximal3.203583.47356HepG2HNRNPK
chr195092036850920427+intron-Proximal3.821668.25843K562PRPF8
chr195092052650920569+intron-Proximal4.699633.62536K562AQR
chr195091998250920017+intron-Proximal4.176734.00320K562AQR
chr195091956350919650+intron-Proximal5.365108.83842K562HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2545M3.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2545M3.6 is not available on ENCORE database.

  • No RBPs affect the gene expression of CTD-2545M3.6 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for CTD-2545M3.6 is not available on ENCORE database.






No RBPs affect the gene expression of CTD-2545M3.6 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for CTD-2545M3.6 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2545M3.6 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2545M3.6 is not avaliable on ENCORE database.