CTD-2529O21.2

General Information

Gene Name       : CTD-2529O21.2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2529O21.2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2529O21.2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2529O21.2 RNA is bound by 4 proteins.  







eCLIP assay for CTD-2529O21.2 is not avaliable on ENCORE database.





4 proteins are bound to CTD-2529O21.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177799849677998596+intron-Distal4.204556.35227HepG2HNRNPL
chr177799824677998302+intron-Distal5.6646012.28009HepG2AGGF1
chr177799897377999091+intron-Distal4.416373.58513HepG2GTF2F1
chr177799855777998625+intron-Distal4.3300810.40173HepG2AGGF1
chr177799899377999105+intron-Distal6.5078414.54219HepG2XPO5
chr177799803677998077+intron-Distal4.748536.94016HepG2AGGF1
chr177799810577998172+intron-Distal4.9121614.66050HepG2AGGF1
chr177799815877998233+intron-Distal5.391514.75034HepG2XPO5
chr177799895377999043+intron-Distal5.6691213.63189HepG2AGGF1
chr177799817277998238+intron-Distal5.9940215.47696HepG2AGGF1
chr177799799377998012+intron-Distal4.204314.36205HepG2AGGF1
chr177799812077998164+intron-Distal4.225044.51091HepG2HNRNPL
chr177799895377999023+intron-Distal3.796204.51074HepG2HNRNPL
chr177799904377999079+intron-Distal4.991246.94016HepG2AGGF1
chr177799833177998480+intron-Distal5.5384621.79865HepG2AGGF1
chr177799862577998660+intron-Distal4.801677.49523HepG2AGGF1
chr177799923177999321+intron-Distal5.371416.94016HepG2AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2529O21.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2529O21.2 is not available on ENCORE database.

  • 4 RBPs can affect the levels of CTD-2529O21.2.  








The Knockdown/knockout RNA-Seq assay for CTD-2529O21.2 is not available on ENCORE database.





4 RBPs can affect the gene expression of CTD-2529O21.2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-2529O21.2ENSG00000261978.125.008504.681502.417303.012802.20700HepG2CIRBP
CTD-2529O21.2ENSG00000261978.116.690602.083203.002002.746002.07130HepG2DKC1
CTD-2529O21.2ENSG00000261978.119.515003.559402.454802.910802.30170HepG2PUF60
CTD-2529O21.2ENSG00000261978.122.257406.269201.827802.340101.85980HepG2SSB
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-2529O21.2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2529O21.2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2529O21.2 is not avaliable on ENCORE database.