C10orf90

General Information

Gene Name       : C10orf90
Gene ID             : ENSG00000154493.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C10orf90)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C10orf90ENSG00000154493.180.000.000.00ENCSR000AEF
HepG2C10orf90ENSG00000154493.180.000.000.00ENCSR985KAT
K562C10orf90ENSG00000154493.180.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C10orf90 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C10orf90 RNA is bound by 8 proteins.  







eCLIP assay for C10orf90 is not avaliable on ENCORE database.





8 proteins are bound to C10orf90 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10128256376128256388-intron-Distal5.512475.45041K562PUM2
chr10128256367128256371-intron-Distal7.6408246.25043K562NSUN2
chr10128256367128256376-intron-Distal5.512475.45041K562PUM2
chr10128256372128256388-intron-Distal4.677054.91669K562TROVE2
chr10128256371128256389-intron-Distal5.811027.28075K562NPM1
chr10128256368128256372-intron-Distal4.677054.91669K562TROVE2
chr10128256376128256388-intron-Distal5.4807616.06251K562GNL3
chr10128256368128256376-intron-Distal7.9888548.51501K562WRN
chr10128256367128256376-intron-Distal5.4807616.06251K562GNL3
chr10128256368128256372-intron-Distal5.091183.69589K562DGCR8
chr10128256371128256378-intron-Distal7.6408246.25043K562NSUN2
chr10128256367128256376-intron-Distal7.0311323.14117K562DDX3X
chr10128256376128256388-intron-Distal7.9888548.51501K562WRN
chr10128256376128256389-intron-Distal7.0311323.14117K562DDX3X
chr10128256378128256388-intron-Distal7.6408246.25043K562NSUN2
chr10128256368128256371-intron-Distal5.811027.28075K562NPM1
chr10128256376128256387-intron-Distal5.091183.69589K562DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C10orf90 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C10orf90 is not available on ENCORE database.

  • 1 RBPs can affect the levels of C10orf90.  








The Knockdown/knockout RNA-Seq assay for C10orf90 is not available on ENCORE database.





1 RBPs can affect the gene expression of C10orf90 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C10orf90ENSG00000154493.1310.270600.0000099999.999902.667301.68650HepG2SRSF3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C10orf90 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C10orf90 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C10orf90 is not avaliable on ENCORE database.