UBXN2B

General Information

Gene Name : UBXN2B
Gene ID : ENSG00000215114.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBXN2B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBXN2B	ENSG00000215114.8	14.48	12.54	13.51	ENCSR000AEF
HepG2	UBXN2B	ENSG00000215114.8	6.14	12.01	9.07	ENCSR985KAT
K562	UBXN2B	ENSG00000215114.8	9.60	10.21	9.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBXN2B is not avaliable on ENCORE database.

Proteins bound to RNA

UBXN2B RNA is bound by 4 proteins.

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eCLIP assay for UBXN2B is not avaliable on ENCORE database.

4 proteins are bound to UBXN2B RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	59324000	59324072	+	CDS,intron-Proximal	4.13944	10.01959	HepG2	PRPF8
chr8	59363096	59363224	+	3'-UTR	4.33000	8.08894	HepG2	QKI
chr8	59355568	59355664	+	intron-Distal	4.48783	3.70058	HepG2	XPO5
chr8	59362475	59362549	+	3'-UTR	4.08298	3.63454	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for UBXN2B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBXN2B is not available on ENCORE database.
77 RBPs can affect the levels of UBXN2B.

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The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.

77 RBPs can affect the gene expression of UBXN2B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBXN2B	ENSG00000215114.3	1331.00040	632.50370	1.07330	34.03010	32.18480	HepG2	ZC3H8
UBXN2B	ENSG00000215114.3	943.73070	406.11240	1.21640	25.47980	23.05870	K562	U2AF2
UBXN2B	ENSG00000215114.3	1259.50690	675.48020	0.89880	22.43130	21.27830	HepG2	SSB
UBXN2B	ENSG00000215114.3	1466.03200	824.13910	0.83090	20.16310	18.79290	HepG2	ETF1
UBXN2B	ENSG00000215114.3	453.32030	814.63630	-0.84560	16.55670	14.93900	K562	NSUN2
UBXN2B	ENSG00000215114.3	375.66800	681.55600	-0.85940	15.30710	13.74220	HepG2	ILF2
UBXN2B	ENSG00000215114.3	907.89890	451.49510	1.00770	14.54340	13.13270	HepG2	DDX21
UBXN2B	ENSG00000215114.3	872.03590	444.48800	0.97210	14.18710	12.91760	K562	HNRNPC
UBXN2B	ENSG00000215114.3	917.69110	552.07640	0.73300	11.86220	10.66340	HepG2	DKC1
UBXN2B	ENSG00000215114.3	1930.41590	1117.24440	0.78890	12.21690	10.49200	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.

8 RBPs can affect the splicing of UBXN2B :

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Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	UBXN2B	ENSG00000215114.3	chr8	+	59325857	59325930			59323917	59324028	59329408	59329512	-0.37900	0.00000	0.00000	excluded	HepG2	U2AF2
SE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507			59346953	59347063	59352191	59352329	0.54900	0.00001	0.00049	included	K562	SRSF1
SE	UBXN2B	ENSG00000215114.3	chr8	+	59325857	59325930			59323917	59324028	59329408	59329512	-0.31700	0.00003	0.00350	excluded	HepG2	SFPQ
SE	UBXN2B	ENSG00000215114.3	chr8	+	59325857	59325930			59323917	59324028	59329408	59329512	0.37200	0.00003	0.00104	included	K562	HNRNPC
MXE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507	59352191	59352329	59346953	59347063	59358465	59358627	0.37500	0.00008	0.00248	1included	K562	SRSF1
SE	UBXN2B	ENSG00000215114.3	chr8	+	59325857	59325930			59323917	59324028	59329408	59329512	0.34200	0.00012	0.02972	included	K562	FTO
SE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507			59346953	59347063	59352191	59352329	0.30500	0.00027	0.00402	included	K562	AQR
SE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507			59346953	59347063	59352191	59352329	0.25400	0.00145	0.02320	included	K562	PUS1
SE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507			59346953	59347063	59352191	59352329	0.51200	0.00202	0.04443	included	HepG2	SRSF1
MXE	UBXN2B	ENSG00000215114.3	chr8	+	59347416	59347507	59352191	59352329	59346953	59347063	59358465	59358627	0.30900	0.00234	0.04554	1included	HepG2	SRSF1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBXN2B

General Information

Functions

Localization

Domains (AlphaFold: UBXN2B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBXN2B is not avaliable on ENCORE database.

4 proteins are bound to UBXN2B RNA:

eCLIP assay for UBXN2B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.

77 RBPs can affect the gene expression of UBXN2B :

The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.

8 RBPs can affect the splicing of UBXN2B :

The Knockdown/knockout RNA-Seq assay for UBXN2B is not avaliable on ENCORE database.