STAMBP

General Information

Gene Name : STAMBP
Gene ID : ENSG00000124356.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STAMBP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	STAMBP	ENSG00000124356.15	68.03	52.93	60.48	ENCSR000AEF
HepG2	STAMBP	ENSG00000124356.15	39.34	67.97	53.66	ENCSR985KAT
K562	STAMBP	ENSG00000124356.15	42.62	45.81	44.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STAMBP is not avaliable on ENCORE database.

Proteins bound to RNA

STAMBP RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for STAMBP is not avaliable on ENCORE database.

18 proteins are bound to STAMBP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	74074639	74074796	+	CDS,intron-Proximal	3.50733	12.67896	HepG2	BCLAF1
chr2	74074600	74074689	+	CDS	4.09862	11.10006	K562	UCHL5
chr2	74074498	74074590	+	CDS,intron-Proximal	3.87534	10.97171	HepG2	BUD13
chr2	74074497	74074606	+	CDS,intron-Proximal	3.66376	9.82901	HepG2	AQR
chr2	74074679	74074743	+	CDS,intron-Proximal	5.23086	9.55253	K562	LIN28B
chr2	74074520	74074796	+	CDS,intron-Proximal	3.21767	9.15494	K562	ZNF800
chr2	74074513	74074581	+	CDS,intron-Proximal	4.60565	9.14010	HepG2	BCLAF1
chr2	74074510	74074600	+	CDS,intron-Proximal	3.17081	8.98598	K562	UCHL5
chr2	74087249	74087330	+	CDS,intron-Proximal	4.49005	8.78209	HepG2	PRPF8
chr2	74056097	74056209	+	5'-UTR,intron-Proximal	3.23939	8.09925	HepG2	NCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 40 entries

eCLIP assay for STAMBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STAMBP is not available on ENCORE database.
59 RBPs can affect the levels of STAMBP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.

59 RBPs can affect the gene expression of STAMBP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STAMBP	ENSG00000124356.11	455.03300	1352.89680	-1.57200	29.26690	27.29940	HepG2	CALR
STAMBP	ENSG00000124356.11	1008.64370	1676.56430	-0.73310	13.42190	12.01340	HepG2	PUM2
STAMBP	ENSG00000124356.11	2275.80460	1248.00640	0.86670	13.11570	10.40180	K562	HNRNPK
STAMBP	ENSG00000124356.11	2255.51590	1332.83470	0.75890	11.12090	9.83870	HepG2	U2AF1
STAMBP	ENSG00000124356.11	1667.80740	1071.84990	0.63770	10.45410	8.89350	K562	U2AF2
STAMBP	ENSG00000124356.11	851.75420	1482.97080	-0.80000	9.04430	7.92900	HepG2	GPKOW
STAMBP	ENSG00000124356.11	523.05100	960.68610	-0.87710	9.68830	6.78990	K562	DDX51
STAMBP	ENSG00000124356.11	1016.39040	1404.15620	-0.46620	7.38850	6.47540	HepG2	PCBP1
STAMBP	ENSG00000124356.11	1017.47620	1702.01090	-0.74220	8.36690	6.38020	K562	UTP3
STAMBP	ENSG00000124356.11	1070.67720	1580.52610	-0.56190	7.07590	6.17880	HepG2	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 69 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.

4 RBPs can affect the splicing of STAMBP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	STAMBP	ENSG00000124356.11	chr2	+	74087157	74087278	74087178	74087278	74086354	74086493	0.08300	0.00000	0.00000	longer	K562	AQR
A5SS	STAMBP	ENSG00000124356.11	chr2	+	74076465	74076705	74076465	74076614	74077502	74077589	0.07900	0.00000	0.00002	longer	K562	AQR
SE	STAMBP	ENSG00000124356.11	chr2	+	74087660	74087716	74087178	74087278	74089329	74089933	0.07300	0.00002	0.01476	included	HepG2	DROSHA
SE	STAMBP	ENSG00000124356.11	chr2	+	74056531	74056637	74056093	74056123	74057971	74058025	0.15100	0.00040	0.01865	included	K562	HNRNPU
SE	STAMBP	ENSG00000124356.11	chr2	+	74089329	74089431	74087203	74087278	74097269	74097479	-0.09500	0.00178	0.03312	excluded	HepG2	U2AF1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STAMBP

General Information

Functions

Localization

Domains (AlphaFold: STAMBP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STAMBP is not avaliable on ENCORE database.

18 proteins are bound to STAMBP RNA:

eCLIP assay for STAMBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.

59 RBPs can affect the gene expression of STAMBP :

The Knockdown/knockout RNA-Seq assay for STAMBP is not available on ENCORE database.

4 RBPs can affect the splicing of STAMBP :

The Knockdown/knockout RNA-Seq assay for STAMBP is not avaliable on ENCORE database.