SS18

General Information

Gene Name : SS18
Gene ID : ENSG00000141380.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SS18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SS18	ENSG00000141380.13	66.04	63.36	64.70	ENCSR000AEF
HepG2	SS18	ENSG00000141380.13	40.88	43.81	42.34	ENCSR985KAT
K562	SS18	ENSG00000141380.13	69.11	78.03	73.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SS18 is not avaliable on ENCORE database.

Proteins bound to RNA

SS18 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for SS18 is not avaliable on ENCORE database.

27 proteins are bound to SS18 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	23617213	23617284	-	intron-Distal	5.18039	32.04549	K562	KHSRP
chr18	23655347	23655406	-	intron-Distal	5.01019	26.72441	K562	KHSRP
chr18	23655461	23655605	-	intron-Distal	5.27587	23.32803	K562	KHSRP
chr18	23655295	23655347	-	intron-Distal	5.22401	19.95892	K562	KHSRP
chr18	23596706	23596784	-	3'-UTR,intron-Distal	4.56013	18.24825	K562	TARDBP
chr18	23597838	23597891	-	3'-UTR,intron-Distal,intron-Proximal	4.15086	17.28617	K562	PUM2
chr18	23633075	23633201	-	intron-Distal	5.79819	16.99084	K562	KHSRP
chr18	23663898	23663982	-	intron-Distal,intron-Proximal	4.25065	16.88282	K562	KHSRP
chr18	23670464	23670564	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.13881	16.12600	K562	DDX3X
chr18	23615513	23615648	-	intron-Distal,intron-Proximal	4.30293	14.67642	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 95 entries

eCLIP assay for SS18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SS18 is not available on ENCORE database.
72 RBPs can affect the levels of SS18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SS18 is not available on ENCORE database.

72 RBPs can affect the gene expression of SS18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SS18	ENSG00000141380.9	1007.70950	1842.70040	-0.87070	24.55460	21.30360	K562	DDX27
SS18	ENSG00000141380.9	1714.79930	1097.36150	0.64390	14.67510	13.76990	HepG2	SRSF1
SS18	ENSG00000141380.9	1326.79340	1874.93240	-0.49890	11.05770	9.73170	HepG2	DAZAP1
SS18	ENSG00000141380.9	506.78110	1111.23820	-1.13270	11.83530	9.49070	HepG2	DDX27
SS18	ENSG00000141380.9	1215.20570	1882.68750	-0.63160	10.31960	9.06910	HepG2	PUM2
SS18	ENSG00000141380.9	902.31450	1323.09010	-0.55220	9.64560	8.69030	HepG2	TRIM56
SS18	ENSG00000141380.9	1417.87620	1884.10190	-0.41010	8.05290	7.15100	HepG2	PUM1
SS18	ENSG00000141380.9	874.26940	1363.63060	-0.64130	8.44070	6.86360	HepG2	SUPT6H
SS18	ENSG00000141380.9	541.57420	988.49940	-0.86810	8.86400	6.82950	HepG2	FKBP4
SS18	ENSG00000141380.9	1265.41030	1701.89330	-0.42750	7.68360	6.60380	HepG2	SLBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SS18 is not available on ENCORE database.

29 RBPs can affect the splicing of SS18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.25500	0.00000	excluded	K562	SRSF1
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.22500	0.00000	excluded	K562	AKAP8L
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.26000	0.00000	excluded	K562	PUS1
SE	SS18	ENSG00000141380.9	chr18	-	23667464	23667541	23658039	23658124	23670464	23670562	-0.13100	0.00000	excluded	K562	PUS1
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	0.16400	0.00011	included	K562	HNRNPL
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.20000	0.00000	excluded	K562	RBM15
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.25800	0.00000	excluded	K562	AGGF1
SE	SS18	ENSG00000141380.9	chr18	-	23667464	23667541	23658039	23658124	23670464	23670562	-0.08800	0.00002	excluded	K562	AGGF1
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	0.17500	0.00038	included	HepG2	PRPF4
SE	SS18	ENSG00000141380.9	chr18	-	23615794	23615887	23614968	23615091	23618518	23618623	-0.23600	0.00231	excluded	K562	EIF3G

Showing 1 to 10 of 46 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SS18

General Information

Functions

Localization

Domains (AlphaFold: SS18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SS18 is not avaliable on ENCORE database.

27 proteins are bound to SS18 RNA:

eCLIP assay for SS18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SS18 is not available on ENCORE database.

72 RBPs can affect the gene expression of SS18 :

The Knockdown/knockout RNA-Seq assay for SS18 is not available on ENCORE database.

29 RBPs can affect the splicing of SS18 :

The Knockdown/knockout RNA-Seq assay for SS18 is not avaliable on ENCORE database.