SCAMP5

General Information

Gene Name : SCAMP5
Gene ID : ENSG00000198794.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SCAMP5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCAMP5	ENSG00000198794.11	16.58	20.65	18.61	ENCSR000AEF
HepG2	SCAMP5	ENSG00000198794.11	31.33	29.42	30.38	ENCSR985KAT
K562	SCAMP5	ENSG00000198794.11	0.11	0.06	0.08	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCAMP5 is not avaliable on ENCORE database.

Proteins bound to RNA

SCAMP5 RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for SCAMP5 is not avaliable on ENCORE database.

7 proteins are bound to SCAMP5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	75313295	75313407	+	3'-UTR	5.22097	26.54975	HepG2	PCBP2
chr15	75311850	75311981	+	3'-UTR	3.98011	14.66322	HepG2	PCBP2
chr15	75305203	75305265	+	intron-Distal,intron-Proximal	5.39908	12.96345	HepG2	EFTUD2
chr15	75289512	75289578	+	5'-UTR,intron-Distal,intron-Proximal	5.53610	10.66887	HepG2	PCBP2
chr15	75313638	75313777	+	3'-UTR	5.19099	10.38790	HepG2	DDX55
chr15	75287920	75288016	+	5'-UTR,intron-Distal,intron-Proximal	3.95651	9.88902	HepG2	DDX3X
chr15	75312241	75312341	+	3'-UTR	3.76515	8.14483	HepG2	PCBP2
chr15	75312220	75312315	+	3'-UTR	4.27314	8.08110	HepG2	UPF1
chr15	75313227	75313295	+	3'-UTR	3.77837	7.95735	HepG2	PCBP2
chr15	75311618	75311675	+	3'-UTR	5.04174	7.45692	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 21 entries

eCLIP assay for SCAMP5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCAMP5 is not available on ENCORE database.
59 RBPs can affect the levels of SCAMP5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.

59 RBPs can affect the gene expression of SCAMP5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCAMP5	ENSG00000198794.7	2454.09810	1230.27060	0.99610	39.18770	37.30550	HepG2	UTP3
SCAMP5	ENSG00000198794.7	1831.42020	1088.48370	0.75050	23.25380	21.74820	HepG2	CKAP4
SCAMP5	ENSG00000198794.7	263.78980	627.34820	-1.24990	16.76460	14.50340	HepG2	CSTF2
SCAMP5	ENSG00000198794.7	929.83640	1401.46900	-0.59190	13.56140	12.57970	HepG2	ZNF622
SCAMP5	ENSG00000198794.7	1504.35190	1006.90020	0.57910	13.08590	11.55760	HepG2	DDX19B
SCAMP5	ENSG00000198794.7	2130.10250	1286.87360	0.72700	10.71820	9.17420	HepG2	EIF4G2
SCAMP5	ENSG00000198794.7	818.76990	1376.57100	-0.74950	9.48140	8.25120	HepG2	HNRNPK
SCAMP5	ENSG00000198794.7	2416.32800	1452.19620	0.73450	8.15920	7.06530	HepG2	EIF4A3
SCAMP5	ENSG00000198794.7	1425.24810	906.19220	0.65320	8.81100	6.99240	HepG2	FASTKD2
SCAMP5	ENSG00000198794.7	1033.25950	620.65400	0.73520	8.28340	6.77710	HepG2	GEMIN5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.

19 RBPs can affect the splicing of SCAMP5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.46600	0.00000	0.00000	included	HepG2	RBM22
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.24200	0.00000	0.00037	included	HepG2	QKI
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.65400	0.00000	0.00000	included	HepG2	PTBP1
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.70300	0.00000	0.00003	included	HepG2	FTO
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.40300	0.00000	0.00000	included	HepG2	MATR3
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.41100	0.00000	0.00000	included	HepG2	SSB
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310312	0.37500	0.00000	0.00003	included	HepG2	SUPV3L1
SE	SCAMP5	ENSG00000198794.7	chr15	+	75299928	75300069	75287896	75288014	75304132	75304187	-0.42900	0.00000	0.00102	excluded	HepG2	NOLC1
SE	SCAMP5	ENSG00000198794.7	chr15	+	75299928	75300069	75287896	75288014	75304132	75304187	0.61900	0.00001	0.00049	included	HepG2	HNRNPC
SE	SCAMP5	ENSG00000198794.7	chr15	+	75308933	75309090	75305017	75305146	75310210	75310266	0.23700	0.00003	0.00444	included	HepG2	IGF2BP3

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCAMP5

General Information

Functions

Localization

Domains (AlphaFold: SCAMP5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCAMP5 is not avaliable on ENCORE database.

7 proteins are bound to SCAMP5 RNA:

eCLIP assay for SCAMP5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.

59 RBPs can affect the gene expression of SCAMP5 :

The Knockdown/knockout RNA-Seq assay for SCAMP5 is not available on ENCORE database.

19 RBPs can affect the splicing of SCAMP5 :

The Knockdown/knockout RNA-Seq assay for SCAMP5 is not avaliable on ENCORE database.