RNF10

General Information

Gene Name : RNF10
Gene ID : ENSG00000022840.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF10)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF10	ENSG00000022840.15	57.58	67.02	62.30	ENCSR000AEF
HepG2	RNF10	ENSG00000022840.15	71.39	68.24	69.81	ENCSR985KAT
K562	RNF10	ENSG00000022840.15	81.54	93.59	87.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF10 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF10 RNA is bound by 29 proteins.

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eCLIP assay for RNF10 is not avaliable on ENCORE database.

29 proteins are bound to RNF10 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	120972226	120972337	+	5'-UTR,intron-Distal,intron-Proximal	4.18702	19.17963	HepG2	DDX3X
chr12	120972262	120972397	+	5'-UTR,intron-Distal,intron-Proximal	4.09275	16.20225	K562	PCBP1
chr12	121001146	121001180	+	CDS,intron-Proximal	4.87935	16.06047	K562	LIN28B
chr12	121000856	121000865	+	5'-UTR,CDS,intron-Distal	4.17419	13.25353	K562	LIN28B
chr12	121000865	121000874	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.07673	12.07647	K562	LIN28B
chr12	120972516	120972582	+	3'-UTR,5'-UTR	5.68781	11.47349	K562	SERBP1
chr12	120972208	120972301	+	5'-UTR,intron-Distal,intron-Proximal	3.34511	10.01201	K562	DDX3X
chr12	121001421	121001498	+	5'-UTR,CDS,intron-Proximal	3.47957	9.04139	HepG2	PRPF8
chr12	121014518	121014652	+	3'-UTR	3.99471	8.74711	HepG2	SUB1
chr12	120984207	120984309	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37394	8.40639	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for RNF10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF10 is not available on ENCORE database.
60 RBPs can affect the levels of RNF10.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF10 is not available on ENCORE database.

60 RBPs can affect the gene expression of RNF10 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF10	ENSG00000022840.11	1998.88790	3986.38720	-0.99590	43.37570	41.09370	K562	DDX47
RNF10	ENSG00000022840.11	974.42280	2514.03640	-1.36740	26.17440	23.72000	K562	RPS19
RNF10	ENSG00000022840.11	1368.67180	2371.96250	-0.79330	19.60770	17.42420	K562	EIF3G
RNF10	ENSG00000022840.11	1344.30690	2396.50060	-0.83410	16.72530	15.33650	K562	HNRNPC
RNF10	ENSG00000022840.11	612.64520	1712.78310	-1.48320	17.43510	15.03450	K562	EIF3A
RNF10	ENSG00000022840.11	5390.27740	3863.22280	0.48050	15.18060	14.25640	HepG2	SRFBP1
RNF10	ENSG00000022840.11	2164.70470	3166.71100	-0.54880	14.26230	13.03190	HepG2	RECQL
RNF10	ENSG00000022840.11	3297.42530	2410.59770	0.45180	13.65480	12.67050	HepG2	ZNF622
RNF10	ENSG00000022840.11	7508.87290	4648.81390	0.69160	12.04640	10.96020	K562	PUS1
RNF10	ENSG00000022840.11	1926.68550	2701.07030	-0.48740	11.77630	10.77840	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF10 is not available on ENCORE database.

23 RBPs can affect the splicing of RNF10 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.12400	0.00041	excluded	K562	PRPF8
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.28400	0.00000	excluded	HepG2	U2AF1
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.40100	0.00000	excluded	HepG2	U2AF2
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.12600	0.00000	excluded	K562	AQR
SE	RNF10	ENSG00000022840.11	chr12	+	120977170	120977271	120972390	120972771	120984207	120984404	-0.05500	0.00000	excluded	K562	PUS1
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.16000	0.00000	excluded	K562	PUS1
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.32500	0.00000	excluded	K562	U2AF1
SE	RNF10	ENSG00000022840.11	chr12	+	120977170	120977271	120972390	120972771	120984207	120984404	0.12000	0.00673	included	K562	LARP7
SE	RNF10	ENSG00000022840.11	chr12	+	120977170	120977271	120972390	120972771	120984207	120984404	0.14500	0.00782	included	K562	TBRG4
SE	RNF10	ENSG00000022840.11	chr12	+	121008993	121009094	121004627	121004783	121013433	121013491	-0.19000	0.00000	excluded	K562	U2AF2

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF10

General Information

Functions

Localization

Domains (AlphaFold: RNF10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF10 is not avaliable on ENCORE database.

29 proteins are bound to RNF10 RNA:

eCLIP assay for RNF10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF10 is not available on ENCORE database.

60 RBPs can affect the gene expression of RNF10 :

The Knockdown/knockout RNA-Seq assay for RNF10 is not available on ENCORE database.

23 RBPs can affect the splicing of RNF10 :

The Knockdown/knockout RNA-Seq assay for RNF10 is not avaliable on ENCORE database.