RGCC

General Information

Gene Name : RGCC
Gene ID : ENSG00000102760.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RGCC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RGCC	ENSG00000102760.12	5.18	6.52	5.85	ENCSR000AEF
HepG2	RGCC	ENSG00000102760.12	1.43	2.52	1.98	ENCSR985KAT
K562	RGCC	ENSG00000102760.12	2.72	3.61	3.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RGCC is not avaliable on ENCORE database.

Proteins bound to RNA

RGCC RNA is bound by 3 proteins.

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eCLIP assay for RGCC is not avaliable on ENCORE database.

3 proteins are bound to RGCC RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	42040336	42040459	+	intron-Distal	6.99548	31.55702	K562	AGGF1
chr13	42040459	42040479	+	intron-Distal	5.82363	12.92204	K562	AGGF1
chr13	42040364	42040479	+	intron-Distal	5.00963	6.09580	K562	HNRNPL
chr13	42044728	42044781	+	3'-UTR	3.32281	4.08171	K562	YBX3
chr13	42044781	42044829	+	3'-UTR	4.10633	3.83925	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 5 of 5 entries

eCLIP assay for RGCC is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RGCC is not available on ENCORE database.
80 RBPs can affect the levels of RGCC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RGCC is not available on ENCORE database.

80 RBPs can affect the gene expression of RGCC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RGCC	ENSG00000102760.12	692.03380	34.81520	4.31300	92.30080	90.45710	HepG2	SRFBP1
RGCC	ENSG00000102760.12	447.97600	29.38560	3.93010	58.19430	55.94480	HepG2	DDX6
RGCC	ENSG00000102760.12	221.87540	39.80890	2.47850	25.83640	23.76970	HepG2	PARN
RGCC	ENSG00000102760.12	153.63800	19.09690	3.00800	21.29110	18.67160	HepG2	SMNDC1
RGCC	ENSG00000102760.12	204.62170	46.24050	2.14560	19.80120	17.88070	HepG2	NOL12
RGCC	ENSG00000102760.12	58.06120	262.87400	-2.17870	19.23320	17.21190	HepG2	RPS3A
RGCC	ENSG00000102760.12	180.87490	21.90780	3.04540	17.58850	15.93630	HepG2	FIP1L1
RGCC	ENSG00000102760.12	139.10020	18.75600	2.89060	13.84040	12.37290	HepG2	RAVER1
RGCC	ENSG00000102760.12	75.86990	9.12110	3.05620	13.41300	11.76940	HepG2	UCHL5
RGCC	ENSG00000102760.12	98.04450	11.53830	3.08690	12.23080	10.27020	HepG2	DDX59
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RGCC

General Information

Functions

Localization

Domains (AlphaFold: RGCC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RGCC is not avaliable on ENCORE database.

3 proteins are bound to RGCC RNA:

eCLIP assay for RGCC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RGCC is not available on ENCORE database.

80 RBPs can affect the gene expression of RGCC :

The Knockdown/knockout RNA-Seq assay for RGCC is not available on ENCORE database.

No RBPs affect the alternative splcing events of RGCC on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RGCC is not avaliable on ENCORE database.