CA5BP1

General Information

Gene Name       : CA5BP1
Gene ID             : ENSG00000186312.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CA5BP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CA5BP1ENSG00000186312.106.627.477.04ENCSR000AEF
HepG2CA5BP1ENSG00000186312.1010.906.008.45ENCSR985KAT
K562CA5BP1ENSG00000186312.1018.4814.3716.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CA5BP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CA5BP1 RNA is bound by 4 proteins.  







eCLIP assay for CA5BP1 is not avaliable on ENCORE database.





4 proteins are bound to CA5BP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1571879115718856+intron-Distal3.605533.01412K562SAFB2
chrX1571899215719091+intron-Distal4.905888.50955K562QKI
chrX1571715015717208+intron-Distal3.695093.08967K562KHDRBS1
chrX1571441915714521+intron-Distal3.245363.69083K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CA5BP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CA5BP1 is not available on ENCORE database.

  • 46 RBPs can affect the levels of CA5BP1.  








The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.





46 RBPs can affect the gene expression of CA5BP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CA5BP1ENSG00000186312.6100.3957051.691100.957602.842802.05900HepG2CIRBP
CA5BP1ENSG00000186312.686.3874049.258100.810402.059501.46450HepG2DDX21
CA5BP1ENSG00000186312.6121.4058062.987800.946603.098302.44090HepG2DDX3X
CA5BP1ENSG00000186312.6115.5855052.015001.151904.115503.40120HepG2EIF2S1
CA5BP1ENSG00000186312.6122.4469057.479801.090904.048603.27910HepG2EIF4A3
CA5BP1ENSG00000186312.683.9405042.501200.981802.837101.92690HepG2GEMIN5
CA5BP1ENSG00000186312.661.59060125.61080-1.028203.533702.81900HepG2GPKOW
CA5BP1ENSG00000186312.697.1554054.490100.834202.164101.54090HepG2HNRNPK
CA5BP1ENSG00000186312.696.2058054.687000.814802.131001.52890HepG2IGF2BP2
CA5BP1ENSG00000186312.6230.14840144.173600.674702.648301.83590HepG2LARP4
CA5BP1ENSG00000186312.6139.7181058.023601.267705.505404.58950HepG2MAGOH
CA5BP1ENSG00000186312.6106.7710058.347000.871702.340901.75770HepG2MATR3
CA5BP1ENSG00000186312.6135.7906067.531901.007601.942101.42680HepG2PUM1
CA5BP1ENSG00000186312.6135.7274050.770301.418606.859505.83770HepG2RBM25
CA5BP1ENSG00000186312.683.0512046.455100.838102.102101.55940HepG2RPS19
CA5BP1ENSG00000186312.6293.11850138.052301.086207.063105.95150HepG2SF3A3
CA5BP1ENSG00000186312.6104.9610056.131400.902902.776002.30240HepG2SRSF1
CA5BP1ENSG00000186312.6103.9162055.241400.911503.308802.70450HepG2TRIM56
CA5BP1ENSG00000186312.6224.83740104.109701.110705.795004.90310HepG2U2AF1
CA5BP1ENSG00000186312.6220.3432065.619701.747505.274803.87590HepG2U2AF2
CA5BP1ENSG00000186312.670.8074038.373600.883702.274301.58540HepG2UCHL5
CA5BP1ENSG00000186312.6247.60750118.202501.066708.122707.18390HepG2UTP3
CA5BP1ENSG00000186312.6856.32430306.613001.4816024.8793023.30950K562AQR
CA5BP1ENSG00000186312.6439.04990333.475700.396702.366401.35000K562CPEB4
CA5BP1ENSG00000186312.6371.03230266.467200.477502.836901.61170K562DDX21
CA5BP1ENSG00000186312.6642.07290345.137600.8955013.4409012.11460K562DDX47
CA5BP1ENSG00000186312.6242.06890142.520000.764203.670802.60710K562EFTUD2
CA5BP1ENSG00000186312.6355.14600188.959300.910204.445303.14100K562EIF3A
CA5BP1ENSG00000186312.6153.8674089.307000.784703.581702.68310K562EIF3G
CA5BP1ENSG00000186312.6271.82110169.249200.683403.980402.99910K562EIF4A3
CA5BP1ENSG00000186312.6290.14020176.011900.721004.874704.10250K562FXR1
CA5BP1ENSG00000186312.6314.58070172.020800.870705.896205.05630K562HNRNPC
CA5BP1ENSG00000186312.6185.39210105.528200.812903.286402.13380K562IGF2BP2
CA5BP1ENSG00000186312.6205.69970110.899200.891205.338104.15910K562MAGOH
CA5BP1ENSG00000186312.6187.40030110.673200.759703.882402.77380K562MATR3
CA5BP1ENSG00000186312.6387.81790298.096000.379502.355101.60800K562MTPAP
CA5BP1ENSG00000186312.6237.62560138.690100.776703.445202.60700K562PRPF8
CA5BP1ENSG00000186312.6211.67310107.746000.974106.390405.41620K562PTBP1
CA5BP1ENSG00000186312.6637.38570439.553800.536003.971902.99860K562PUF60
CA5BP1ENSG00000186312.6205.19970140.763700.543702.199401.31860K562RCC2
CA5BP1ENSG00000186312.6240.45550141.221800.767702.223901.49610K562RPS19
CA5BP1ENSG00000186312.6243.19510142.601700.770003.313502.20920K562RPS3
CA5BP1ENSG00000186312.6383.98070250.463600.616304.047102.72760K562SAFB
CA5BP1ENSG00000186312.6417.91350245.657100.766502.691001.41390K562SFPQ
CA5BP1ENSG00000186312.6212.92970133.436300.674102.980501.90530K562SRFBP1
CA5BP1ENSG00000186312.6437.67800334.851000.386302.612701.69800K562SRPK2
CA5BP1ENSG00000186312.6202.46860105.627800.938605.204604.24020K562SRSF1
CA5BP1ENSG00000186312.6211.33450137.639300.618502.451601.46960K562SRSF4
CA5BP1ENSG00000186312.6157.8834099.759400.662202.640001.61940K562SRSF5
CA5BP1ENSG00000186312.6326.95850237.792700.459302.738101.57920K562SRSF7
CA5BP1ENSG00000186312.6222.21000134.193200.727503.014201.95180K562SUPV3L1
CA5BP1ENSG00000186312.6187.27240103.118100.860704.367003.30160K562TIA1
CA5BP1ENSG00000186312.6293.95340157.645400.898805.944304.44020K562TRIM56
CA5BP1ENSG00000186312.6439.17480351.166900.322501.995801.37880K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CA5BP1 is not available on ENCORE database.





8 RBPs can affect the splicing of CA5BP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811572090415721847-0.674000.000030.00112excludedHepG2U2AF1
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811572090415721847-0.384000.000140.00321excludedK562PUS1
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811571536215715583-0.255000.003810.06627excludedK562U2AF1
SECA5BP1ENSG00000186312.6chrX+1571108515711181157067831570698115715362157155830.274000.000720.08483includedK562HNRNPM
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811571536215715583-0.317000.000330.03011excludedK562HNRNPUL1
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811571536215715583-0.278000.002430.05328excludedK562RBM15
SECA5BP1ENSG00000186312.6chrX+157110851571118115706783157069811571536215715583-0.405000.000000.00001excludedK562AGGF1
SECA5BP1ENSG00000186312.6chrX+1571108515711181157067831570698115715362157155830.244000.002470.07917includedK562PTBP1
A3SSCA5BP1ENSG00000186312.6chrX+1570676315706981157067831570698115693837156939010.113000.004620.02696longerK562AQR
A5SSCA5BP1ENSG00000186312.6chrX+1571108515711286157110851571118115715362157155830.155000.004200.06272longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CA5BP1 is not avaliable on ENCORE database.