ATG13

General Information

Gene Name : ATG13
Gene ID : ENSG00000175224.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATG13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATG13	ENSG00000175224.16	27.06	23.00	25.03	ENCSR000AEF
HepG2	ATG13	ENSG00000175224.16	62.42	39.12	50.77	ENCSR985KAT
K562	ATG13	ENSG00000175224.16	27.52	24.52	26.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATG13 is not avaliable on ENCORE database.

Proteins bound to RNA

ATG13 RNA is bound by 17 proteins.

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eCLIP assay for ATG13 is not avaliable on ENCORE database.

17 proteins are bound to ATG13 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	46694389	46694491	+	3'-UTR	5.26616	37.49669	K562	UPF1
chr11	46694796	46694908	+	3'-UTR,intron-Distal,intron-Proximal	4.55673	29.89096	K562	UPF1
chr11	46694718	46694786	+	3'-UTR	4.87312	25.12543	K562	UPF1
chr11	46694161	46694257	+	3'-UTR	4.25788	20.81548	K562	UPF1
chr11	46694026	46694085	+	3'-UTR	4.81283	18.26619	K562	UPF1
chr11	46694491	46694551	+	3'-UTR	4.37685	16.30024	K562	UPF1
chr11	46694148	46694295	+	3'-UTR	4.03000	15.84143	HepG2	UPF1
chr11	46694279	46694322	+	3'-UTR	5.85947	13.76890	K562	UPF1
chr11	46695865	46695918	+	3'-UTR,intron-Proximal	5.94330	13.23699	K562	UPF1
chr11	46695122	46695162	+	3'-UTR,intron-Distal	5.70289	12.42760	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 44 entries

eCLIP assay for ATG13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATG13 is not available on ENCORE database.
56 RBPs can affect the levels of ATG13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.

56 RBPs can affect the gene expression of ATG13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATG13	ENSG00000175224.12	816.28030	1733.36410	-1.08640	27.42580	26.15310	HepG2	TIAL1
ATG13	ENSG00000175224.12	1446.24470	2500.79210	-0.79010	26.07520	24.85900	HepG2	SSB
ATG13	ENSG00000175224.12	1077.88890	2001.19330	-0.89270	24.54780	23.02900	HepG2	CELF1
ATG13	ENSG00000175224.12	1194.82290	1748.81720	-0.54960	11.45260	10.42170	HepG2	TRIM56
ATG13	ENSG00000175224.12	828.71480	1349.01650	-0.70300	9.42930	8.25690	HepG2	DDX21
ATG13	ENSG00000175224.12	1188.41500	1910.79690	-0.68510	9.06780	7.86000	HepG2	HNRNPK
ATG13	ENSG00000175224.12	2639.83370	1476.19030	0.83850	9.57010	7.61290	HepG2	SRSF3
ATG13	ENSG00000175224.12	1302.10070	2053.65260	-0.65740	8.66690	6.53390	K562	ABCF1
ATG13	ENSG00000175224.12	2175.90380	3053.24160	-0.48870	8.03840	6.40990	K562	CELF1
ATG13	ENSG00000175224.12	2079.69420	1395.62670	0.57540	7.27970	6.36320	HepG2	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 63 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.

16 RBPs can affect the splicing of ATG13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATG13	ENSG00000175224.12	chr11	+	46689322	46689437	46686932	46687069	46690048	46690126	-0.11500	0.00000	0.00005	excluded	K562	AQR
SE	ATG13	ENSG00000175224.12	chr11	+	46686398	46686509	46680941	46681035	46686932	46687069	0.25600	0.00000	0.00000	included	HepG2	PTBP1
SE	ATG13	ENSG00000175224.12	chr11	+	46652446	46652541	46651594	46651650	46665828	46665910	0.10400	0.00000	0.00034	included	HepG2	HNRNPC
SE	ATG13	ENSG00000175224.12	chr11	+	46686398	46686509	46680941	46681035	46686932	46687069	0.22800	0.00000	0.00000	included	K562	PTBP1
RI	ATG13	ENSG00000175224.12	chr11	+	46690048	46690460	46690048	46690126	46690343	46690460	0.12200	0.00000	0.00000	included	K562	AQR
SE	ATG13	ENSG00000175224.12	chr11	+	46642591	46642707	46639809	46639925	46651594	46651650	0.35400	0.00001	0.00049	included	HepG2	HNRNPC
SE	ATG13	ENSG00000175224.12	chr11	+	46652446	46652541	46651594	46651650	46665828	46665910	-0.11200	0.00003	0.01108	excluded	K562	NPM1
A3SS	ATG13	ENSG00000175224.12	chr11	+	46666859	46666969	46666888	46666969	46665828	46665910	0.09900	0.00006	0.00051	longer	K562	AQR
SE	ATG13	ENSG00000175224.12	chr11	+	46651594	46651650	46638825	46639440	46665828	46665910	-0.32900	0.00007	0.00531	excluded	K562	HNRNPK
SE	ATG13	ENSG00000175224.12	chr11	+	46651594	46651650	46638825	46639440	46665828	46665910	-0.18700	0.00009	0.00450	excluded	HepG2	SF3A3

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATG13

General Information

Functions

Localization

Domains (AlphaFold: ATG13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATG13 is not avaliable on ENCORE database.

17 proteins are bound to ATG13 RNA:

eCLIP assay for ATG13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.

56 RBPs can affect the gene expression of ATG13 :

The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.

16 RBPs can affect the splicing of ATG13 :

The Knockdown/knockout RNA-Seq assay for ATG13 is not avaliable on ENCORE database.