ZNF496

General Information

Gene Name : ZNF496
Gene ID : ENSG00000162714.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZNF496)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNF496	ENSG00000162714.12	7.23	8.62	7.92	ENCSR000AEF
HepG2	ZNF496	ENSG00000162714.12	10.78	8.91	9.84	ENCSR985KAT
K562	ZNF496	ENSG00000162714.12	25.63	21.05	23.34	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNF496 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNF496 RNA is bound by 24 proteins.

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eCLIP assay for ZNF496 is not avaliable on ENCORE database.

24 proteins are bound to ZNF496 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	247472957	247473001	-	intron-Distal,intron-Proximal	5.43190	42.80729	K562	AQR
chr1	247480538	247480626	-	intron-Distal	4.99612	21.48376	HepG2	SUGP2
chr1	247480986	247481078	-	intron-Distal	4.08639	20.42321	HepG2	SUGP2
chr1	247461602	247461637	-	3'-UTR,intron-Distal	4.97224	16.66765	K562	PABPC4
chr1	247472914	247472957	-	intron-Distal,intron-Proximal	4.97179	15.98112	K562	AQR
chr1	247471518	247471623	-	intron-Distal	5.53108	13.42901	K562	TARDBP
chr1	247471623	247471722	-	intron-Distal,intron-Proximal	4.49043	11.72355	K562	TARDBP
chr1	247471822	247471948	-	CDS,intron-Distal,intron-Proximal	3.42300	11.64384	K562	AQR
chr1	247480931	247481084	-	intron-Distal	4.36858	11.19543	K562	HNRNPM
chr1	247480267	247480357	-	intron-Distal	4.02649	10.98367	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 94 entries

eCLIP assay for ZNF496 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNF496 is not available on ENCORE database.
84 RBPs can affect the levels of ZNF496.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.

84 RBPs can affect the gene expression of ZNF496 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNF496	ENSG00000162714.8	669.48140	1439.37500	-1.10430	32.93670	31.70080	HepG2	SRSF1
ZNF496	ENSG00000162714.8	607.42160	1102.58080	-0.86010	22.02890	20.84650	HepG2	ZNF622
ZNF496	ENSG00000162714.8	1126.23680	1862.77760	-0.72590	18.39830	17.07610	HepG2	ETF1
ZNF496	ENSG00000162714.8	983.01440	1526.68710	-0.63510	13.93340	12.96010	HepG2	SSB
ZNF496	ENSG00000162714.8	790.00610	1472.81340	-0.89860	11.54060	10.34270	HepG2	DDX3X
ZNF496	ENSG00000162714.8	716.18470	1364.17190	-0.92960	10.91450	9.72250	HepG2	MATR3
ZNF496	ENSG00000162714.8	722.82720	1278.75050	-0.82300	9.86610	8.67740	HepG2	IGF2BP2
ZNF496	ENSG00000162714.8	1227.05300	1862.41920	-0.60200	9.61370	8.15870	K562	POLR2G
ZNF496	ENSG00000162714.8	1038.74040	1474.06600	-0.50500	7.97390	7.13980	HepG2	NELFE
ZNF496	ENSG00000162714.8	739.36450	1344.75890	-0.86300	8.17020	6.81710	HepG2	RPS3A
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 97 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.

12 RBPs can affect the splicing of ZNF496 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ZNF496	ENSG00000162714.8	chr1	-	247473380	247473537	247473000	247473108	247473625	247473758	0.07700	0.00000	0.00005	included	K562	AKAP8L
SE	ZNF496	ENSG00000162714.8	chr1	-	247472740	247472833	247471776	247471890	247473000	247473108	-0.08100	0.00001	0.01079	excluded	K562	PPIL4
SE	ZNF496	ENSG00000162714.8	chr1	-	247472740	247472833	247471776	247471890	247473000	247473108	0.05300	0.00001	0.00062	included	K562	HNRNPU
SE	ZNF496	ENSG00000162714.8	chr1	-	247473380	247473537	247473000	247473108	247473625	247473758	0.07900	0.00002	0.00085	included	HepG2	HNRNPK
SE	ZNF496	ENSG00000162714.8	chr1	-	247472740	247472881	247471776	247471890	247473000	247473108	0.19100	0.00002	0.01590	included	HepG2	GRSF1
SE	ZNF496	ENSG00000162714.8	chr1	-	247471236	247471329	247460713	247464578	247471776	247477154	0.14000	0.00012	0.00813	included	HepG2	MATR3
SE	ZNF496	ENSG00000162714.8	chr1	-	247472740	247472833	247471776	247471890	247473000	247473108	0.10700	0.00016	0.01066	included	K562	HNRNPK
A3SS	ZNF496	ENSG00000162714.8	chr1	-	247472740	247472881	247472740	247472833	247473000	247473108	-0.70700	0.00022	0.06231	shorter	K562	HNRNPUL1
SE	ZNF496	ENSG00000162714.8	chr1	-	247485999	247486107	247473625	247473758	247486455	247486523	0.07800	0.00048	0.01150	included	K562	SF3B4
SE	ZNF496	ENSG00000162714.8	chr1	-	247485999	247486107	247473625	247473758	247486455	247486532	0.08900	0.00080	0.01883	included	K562	U2AF1

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNF496

General Information

Functions

Localization

Domains (AlphaFold: ZNF496)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNF496 is not avaliable on ENCORE database.

24 proteins are bound to ZNF496 RNA:

eCLIP assay for ZNF496 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.

84 RBPs can affect the gene expression of ZNF496 :

The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.

12 RBPs can affect the splicing of ZNF496 :

The Knockdown/knockout RNA-Seq assay for ZNF496 is not avaliable on ENCORE database.