TSR1

General Information

Gene Name : TSR1
Gene ID : ENSG00000167721.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TSR1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TSR1	ENSG00000167721.10	35.66	34.68	35.17	ENCSR000AEF
HepG2	TSR1	ENSG00000167721.10	33.93	41.49	37.71	ENCSR985KAT
K562	TSR1	ENSG00000167721.10	41.97	40.56	41.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TSR1 is not avaliable on ENCORE database.

Proteins bound to RNA

TSR1 RNA is bound by 35 proteins.

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eCLIP assay for TSR1 is not avaliable on ENCORE database.

35 proteins are bound to TSR1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	2233577	2233644	-	intron-Distal	4.04628	400.00000	HepG2	LARP7
chr17	2233592	2233603	-	intron-Distal	6.56303	400.00000	HepG2	NOLC1
chr17	2233586	2233615	-	intron-Distal	4.92961	400.00000	HepG2	DKC1
chr17	2232446	2232474	-	intron-Distal	6.67886	400.00000	HepG2	NOLC1
chr17	2232420	2232428	-	intron-Distal	7.05168	400.00000	HepG2	NOLC1
chr17	2233576	2233646	-	intron-Distal	5.96925	400.00000	K562	AATF
chr17	2232420	2232440	-	intron-Distal	4.49364	400.00000	K562	SMNDC1
chr17	2232435	2232446	-	intron-Distal	6.49868	400.00000	HepG2	NOLC1
chr17	2232420	2232490	-	intron-Distal	4.21360	400.00000	K562	PHF6
chr17	2232458	2232485	-	intron-Distal	4.58360	400.00000	HepG2	DKC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 131 entries

eCLIP assay for TSR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TSR1 is not available on ENCORE database.
95 RBPs can affect the levels of TSR1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TSR1 is not available on ENCORE database.

95 RBPs can affect the gene expression of TSR1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSR1	ENSG00000167721.6	723.00060	1664.17280	-1.20270	32.85360	31.47570	HepG2	TIAL1
TSR1	ENSG00000167721.6	792.99060	2312.39980	-1.54400	32.90530	30.98710	HepG2	GPKOW
TSR1	ENSG00000167721.6	1113.81940	2165.89450	-0.95940	32.58830	30.72660	HepG2	SRSF7
TSR1	ENSG00000167721.6	1224.87100	2204.53930	-0.84780	26.15200	24.27300	HepG2	HNRNPF
TSR1	ENSG00000167721.6	5926.88620	3819.43370	0.63380	21.50160	19.84950	K562	DDX47
TSR1	ENSG00000167721.6	1535.24120	2468.19740	-0.68500	20.40320	19.28990	HepG2	SSB
TSR1	ENSG00000167721.6	2247.28470	3689.39590	-0.71520	20.65420	18.95470	K562	EIF2S2
TSR1	ENSG00000167721.6	1034.54040	2206.77160	-1.09290	20.27190	18.81240	HepG2	HNRNPLL
TSR1	ENSG00000167721.6	838.93960	1535.16020	-0.87180	20.48460	18.76040	HepG2	DNAJC21
TSR1	ENSG00000167721.6	3014.40360	1893.12140	0.67100	17.32020	15.91860	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TSR1 is not available on ENCORE database.

6 RBPs can affect the splicing of TSR1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.33200	0.00000	0.00000	excluded	HepG2	U2AF1
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.46600	0.00000	0.00000	excluded	HepG2	U2AF2
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2240801	-0.13100	0.00000	0.00002	excluded	K562	AQR
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.15500	0.00000	0.00032	excluded	K562	SUPV3L1
A3SS	TSR1	ENSG00000167721.6	chr17	-	2232636	2232806	2232636	2232769	2233808	2233919	0.05500	0.00000	0.00001	longer	K562	AQR
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.17100	0.00002	0.00080	excluded	K562	HNRNPC
SE	TSR1	ENSG00000167721.6	chr17	-	2232636	2232769	2228597	2228714	2233808	2233919	-0.07200	0.00010	0.00274	excluded	HepG2	U2AF1
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.07400	0.00078	0.03106	excluded	K562	HNRNPU
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.13500	0.00232	0.07386	excluded	HepG2	HNRNPC
SE	TSR1	ENSG00000167721.6	chr17	-	2239330	2239434	2238804	2239024	2239624	2239751	-0.36300	0.00281	0.04591	excluded	K562	U2AF2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TSR1

General Information

Functions

Localization

Domains (AlphaFold: TSR1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TSR1 is not avaliable on ENCORE database.

35 proteins are bound to TSR1 RNA:

eCLIP assay for TSR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TSR1 is not available on ENCORE database.

95 RBPs can affect the gene expression of TSR1 :

The Knockdown/knockout RNA-Seq assay for TSR1 is not available on ENCORE database.

6 RBPs can affect the splicing of TSR1 :

The Knockdown/knockout RNA-Seq assay for TSR1 is not avaliable on ENCORE database.