TMEM175

General Information

Gene Name : TMEM175
Gene ID : ENSG00000127419.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM175)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM175	ENSG00000127419.16	2.38	6.80	4.59	ENCSR000AEF
HepG2	TMEM175	ENSG00000127419.16	6.46	1.78	4.12	ENCSR985KAT
K562	TMEM175	ENSG00000127419.16	15.56	5.71	10.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM175 is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM175 RNA is bound by 5 proteins.

CanvasJS.com

eCLIP assay for TMEM175 is not avaliable on ENCORE database.

5 proteins are bound to TMEM175 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	941671	941735	+	CDS,intron-Distal,intron-Proximal	5.53814	11.11361	K562	PRPF8
chr4	946594	946654	+	intron-Distal	6.04155	10.98400	K562	EIF4G2
chr4	946304	946357	+	intron-Distal,intron-Proximal	5.48869	8.53131	K562	EIF4G2
chr4	941635	941738	+	CDS,intron-Distal,intron-Proximal	3.44291	8.43093	HepG2	PRPF8
chr4	946771	946836	+	intron-Distal	4.37796	7.62986	K562	EIF4G2
chr4	946667	946710	+	intron-Distal	5.37303	7.26071	K562	EIF4G2
chr4	946455	946513	+	intron-Distal	5.17044	6.58769	K562	EIF4G2
chr4	949995	950116	+	intron-Distal,intron-Proximal	4.56196	5.59072	HepG2	HNRNPK
chr4	946216	946280	+	3'-UTR,CDS,intron-Proximal	4.31817	4.84106	K562	EIF4G2
chr4	946560	946628	+	intron-Distal	3.38961	4.41411	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 12 entries

eCLIP assay for TMEM175 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM175 is not available on ENCORE database.
112 RBPs can affect the levels of TMEM175.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM175 is not available on ENCORE database.

112 RBPs can affect the gene expression of TMEM175 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM175	ENSG00000127419.12	438.77560	158.72790	1.46680	24.70100	23.47580	HepG2	ZNF622
TMEM175	ENSG00000127419.12	247.73430	57.99860	2.09460	17.66220	16.25670	HepG2	EIF2S1
TMEM175	ENSG00000127419.12	260.12680	66.60310	1.96550	16.08130	14.63820	HepG2	NCBP2
TMEM175	ENSG00000127419.12	460.04850	202.04110	1.18700	13.95680	12.22150	K562	POLR2G
TMEM175	ENSG00000127419.12	221.61770	64.08140	1.79000	12.68160	11.34050	HepG2	EIF4A3
TMEM175	ENSG00000127419.12	152.99870	46.07790	1.73130	12.13030	11.07160	HepG2	TRIM56
TMEM175	ENSG00000127419.12	200.38450	76.88140	1.38200	11.05300	9.95020	HepG2	SUCLG1
TMEM175	ENSG00000127419.12	458.63960	238.01180	0.94620	10.93480	9.65040	K562	EIF2S2
TMEM175	ENSG00000127419.12	197.72770	60.80150	1.70120	10.88670	9.58130	HepG2	HNRNPK
TMEM175	ENSG00000127419.12	190.84590	59.99430	1.66940	10.84790	9.57350	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 127 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM175 is not available on ENCORE database.

9 RBPs can affect the splicing of TMEM175 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TMEM175	ENSG00000127419.12	chr4	+	945433	945505			945469	945505	944994	945046	0.72500	0.00005	0.00211	longer	HepG2	U2AF2
SE	TMEM175	ENSG00000127419.12	chr4	+	941496	941942			926262	926328	944208	944279	0.55200	0.00018	0.06580	included	HepG2	BCCIP
A3SS	TMEM175	ENSG00000127419.12	chr4	+	945433	945505			945469	945505	944994	945046	0.32100	0.00039	0.04966	longer	K562	HNRNPC
A5SS	TMEM175	ENSG00000127419.12	chr4	+	941903	942403			941903	941942	944208	944306	0.38000	0.00132	0.02363	longer	K562	AQR
MXE	TMEM175	ENSG00000127419.12	chr4	+	945469	945505	946154	946238	944994	945046	946977	947142	-0.41600	0.00159	0.07423	2included	HepG2	XPO5
MXE	TMEM175	ENSG00000127419.12	chr4	+	945433	945505	946154	946238	944994	945046	946977	947142	0.26100	0.00165	0.05216	1included	HepG2	SF3A3
SE	TMEM175	ENSG00000127419.12	chr4	+	943820	943921			941903	941942	944208	944306	0.21800	0.00239	0.06099	included	K562	AKAP8L
SE	TMEM175	ENSG00000127419.12	chr4	+	941496	941680			926174	926328	944208	944306	-0.49300	0.00299	0.05988	excluded	HepG2	SRSF1
MXE	TMEM175	ENSG00000127419.12	chr4	+	945433	945505	946154	946238	944994	945046	946977	947142	0.23400	0.00492	0.06892	1included	K562	HNRNPC
MXE	TMEM175	ENSG00000127419.12	chr4	+	945469	945505	946154	946238	944994	945046	946977	947142	-0.29100	0.00505	0.09197	2included	HepG2	TIAL1

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM175

General Information

Functions

Localization

Domains (AlphaFold: TMEM175)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM175 is not avaliable on ENCORE database.

5 proteins are bound to TMEM175 RNA:

eCLIP assay for TMEM175 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM175 is not available on ENCORE database.

112 RBPs can affect the gene expression of TMEM175 :

The Knockdown/knockout RNA-Seq assay for TMEM175 is not available on ENCORE database.

9 RBPs can affect the splicing of TMEM175 :

The Knockdown/knockout RNA-Seq assay for TMEM175 is not avaliable on ENCORE database.