SNAP47

General Information

Gene Name : SNAP47
Gene ID : ENSG00000143740.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNAP47)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNAP47	ENSG00000143740.14	13.52	14.00	13.76	ENCSR000AEF
HepG2	SNAP47	ENSG00000143740.14	17.09	14.06	15.57	ENCSR985KAT
K562	SNAP47	ENSG00000143740.14	26.62	21.92	24.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Proteins bound to RNA

SNAP47 RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

24 proteins are bound to SNAP47 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	227955357	227955542	+	intron-Distal	5.89313	29.64385	K562	DROSHA
chr1	227955190	227955373	+	intron-Distal	6.23386	22.07242	K562	TARDBP
chr1	227955225	227955353	+	intron-Distal	5.93758	19.66728	K562	DROSHA
chr1	227954782	227954840	+	CDS,intron-Proximal	5.08063	17.02742	K562	AQR
chr1	227955367	227955480	+	intron-Distal	6.81753	15.95334	HepG2	RBFOX2
chr1	227955080	227955190	+	intron-Distal	5.75899	15.10225	K562	TARDBP
chr1	227968176	227968228	+	intron-Proximal	6.24495	14.81397	K562	AQR
chr1	227968228	227968275	+	CDS	4.70810	13.90015	K562	AQR
chr1	227955390	227955480	+	intron-Distal	6.00811	13.63751	K562	EIF4G2
chr1	227923538	227923704	+	intron-Distal	6.19399	13.21421	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNAP47 is not available on ENCORE database.
36 RBPs can affect the levels of SNAP47.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

36 RBPs can affect the gene expression of SNAP47 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNAP47	ENSG00000143740.10	677.19570	422.45540	0.68070	6.17400	5.08140	K562	TARDBP
SNAP47	ENSG00000143740.10	207.18170	372.66520	-0.84700	5.49550	4.75130	HepG2	TAF15
SNAP47	ENSG00000143740.10	719.93830	417.17800	0.78710	6.49090	4.63690	K562	IGF2BP2
SNAP47	ENSG00000143740.10	458.56970	322.07700	0.50960	4.81960	4.08190	HepG2	PUM1
SNAP47	ENSG00000143740.10	409.66380	219.88150	0.89760	4.94280	3.91570	HepG2	CNOT7
SNAP47	ENSG00000143740.10	434.78030	299.56940	0.53730	4.50420	3.73980	HepG2	SRSF5
SNAP47	ENSG00000143740.10	603.75260	417.46030	0.53220	4.30110	3.42450	K562	SRSF1
SNAP47	ENSG00000143740.10	848.98380	645.58910	0.39500	4.04810	3.38540	K562	AGGF1
SNAP47	ENSG00000143740.10	587.84280	407.51690	0.52850	4.26600	3.21720	K562	TIA1
SNAP47	ENSG00000143740.10	562.42220	368.38500	0.61030	3.78740	3.05890	HepG2	MATR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

4 RBPs can affect the splicing of SNAP47 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.32900	0.00000	0.00001	excluded	K562	PUS1
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.25600	0.00012	0.00674	excluded	K562	UTP18
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.22200	0.00097	0.02031	excluded	K562	SRSF1
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.28600	0.00229	0.03906	excluded	K562	U2AF2

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNAP47

General Information

Functions

Localization

Domains (AlphaFold: SNAP47)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

24 proteins are bound to SNAP47 RNA:

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

36 RBPs can affect the gene expression of SNAP47 :

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

4 RBPs can affect the splicing of SNAP47 :

The Knockdown/knockout RNA-Seq assay for SNAP47 is not avaliable on ENCORE database.