RPL13

General Information

Gene Name : RPL13
Gene ID : ENSG00000167526.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPL13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPL13	ENSG00000167526.13	550.16	1151.86	851.01	ENCSR000AEF
HepG2	RPL13	ENSG00000167526.13	3177.14	1791.26	2484.20	ENCSR985KAT
K562	RPL13	ENSG00000167526.13	1097.04	845.90	971.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPL13 is not avaliable on ENCORE database.

Proteins bound to RNA

RPL13 RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for RPL13 is not avaliable on ENCORE database.

30 proteins are bound to RPL13 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	89628748	89628768	+	3'-UTR,CDS	3.64593	400.00000	K562	PABPC4
chr16	89629332	89629339	+	3'-UTR,CDS	3.28209	400.00000	K562	YBX3
chr16	89629302	89629338	+	3'-UTR,CDS	4.17669	400.00000	K562	PABPC4
chr16	89629291	89629295	+	3'-UTR,CDS,intron-Proximal	4.52708	400.00000	K562	PABPC4
chr16	89628778	89628800	+	3'-UTR,CDS,intron-Proximal	4.24027	400.00000	K562	PABPC4
chr16	89629328	89629332	+	3'-UTR,CDS	3.41840	400.00000	K562	YBX3
chr16	89629339	89629353	+	3'-UTR,CDS	3.50116	400.00000	K562	YBX3
chr16	89629319	89629328	+	3'-UTR,CDS	3.54466	400.00000	K562	YBX3
chr16	89629353	89629356	+	3'-UTR,CDS	3.80125	400.00000	K562	YBX3
chr16	89629309	89629319	+	3'-UTR,CDS	3.54053	400.00000	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 191 entries

eCLIP assay for RPL13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPL13 is not available on ENCORE database.
125 RBPs can affect the levels of RPL13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPL13 is not available on ENCORE database.

125 RBPs can affect the gene expression of RPL13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPL13	ENSG00000167526.9	8786.62850	31627.44510	-1.84780	260.92970	258.34930	HepG2	SRSF1
RPL13	ENSG00000167526.9	10126.74130	29103.41920	-1.52300	145.72660	143.31820	HepG2	PTBP1
RPL13	ENSG00000167526.9	12769.48350	32389.58170	-1.34280	121.77700	119.61680	HepG2	NELFE
RPL13	ENSG00000167526.9	13951.13130	6361.08580	1.13290	100.37980	97.61460	HepG2	SAFB2
RPL13	ENSG00000167526.9	13087.02230	31520.41510	-1.26810	72.03470	69.69280	HepG2	QKI
RPL13	ENSG00000167526.9	13775.77150	25730.40610	-0.90130	61.91900	60.00870	HepG2	SRSF9
RPL13	ENSG00000167526.9	14366.42160	28427.32000	-0.98460	48.14670	46.18030	HepG2	TAF15
RPL13	ENSG00000167526.9	12427.92350	7002.78800	0.82750	41.99390	40.13320	HepG2	TRIM56
RPL13	ENSG00000167526.9	22851.67670	15237.04060	0.58460	35.24640	33.32820	HepG2	SLBP
RPL13	ENSG00000167526.9	13346.75870	28606.54060	-1.09990	35.35270	33.16520	HepG2	RBM25
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 147 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPL13 is not available on ENCORE database.

38 RBPs can affect the splicing of RPL13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.12800	0.00002	longer	K562	GEMIN5
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.06100	0.00000	longer	HepG2	HNRNPK
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.11500	0.00088	longer	K562	EFTUD2
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.20000	0.00000	longer	K562	RBM22
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.06100	0.00001	longer	HepG2	AKAP1
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627353	89627471	0.21600	0.00000	longer	HepG2	NOL12
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.08000	0.00000	longer	HepG2	MATR3
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.15300	0.00000	longer	K562	SUPV3L1
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.12600	0.00000	longer	HepG2	SUPV3L1
A3SS	RPL13	ENSG00000167526.9	chr16	+	89627634	89628159	89628003	89628159	89627347	89627471	0.05700	0.00229	longer	HepG2	IGF2BP3

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPL13

General Information

Functions

Localization

Domains (AlphaFold: RPL13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPL13 is not avaliable on ENCORE database.

30 proteins are bound to RPL13 RNA:

eCLIP assay for RPL13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPL13 is not available on ENCORE database.

125 RBPs can affect the gene expression of RPL13 :

The Knockdown/knockout RNA-Seq assay for RPL13 is not available on ENCORE database.

38 RBPs can affect the splicing of RPL13 :

The Knockdown/knockout RNA-Seq assay for RPL13 is not avaliable on ENCORE database.