PDE9A

General Information

Gene Name : PDE9A
Gene ID : ENSG00000160191.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDE9A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDE9A	ENSG00000160191.17	0.15	0.22	0.18	ENCSR000AEF
HepG2	PDE9A	ENSG00000160191.17	9.72	6.77	8.25	ENCSR985KAT
K562	PDE9A	ENSG00000160191.17	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDE9A is not avaliable on ENCORE database.

Proteins bound to RNA

PDE9A RNA is bound by 14 proteins.

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eCLIP assay for PDE9A is not avaliable on ENCORE database.

14 proteins are bound to PDE9A RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	44083462	44083599	+	intron-Distal	7.95690	114.36610	HepG2	AGGF1
chr21	44091001	44091085	+	intron-Distal	7.84049	64.32829	HepG2	AGGF1
chr21	44083251	44083376	+	intron-Distal	6.38526	60.20009	HepG2	AGGF1
chr21	44090999	44091077	+	intron-Distal	6.93494	55.94991	HepG2	HNRNPL
chr21	44083474	44083618	+	intron-Distal	8.38487	50.32084	HepG2	XPO5
chr21	44083332	44083454	+	intron-Distal	7.31348	45.18548	HepG2	HNRNPL
chr21	44090943	44091001	+	intron-Distal	7.12219	39.97491	HepG2	AGGF1
chr21	44090940	44090999	+	intron-Distal	7.29004	39.87718	HepG2	HNRNPL
chr21	44083723	44083805	+	intron-Distal	7.50971	39.73865	HepG2	AGGF1
chr21	44090882	44091001	+	intron-Distal	8.04340	37.96592	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 140 entries

eCLIP assay for PDE9A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDE9A is not available on ENCORE database.
81 RBPs can affect the levels of PDE9A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDE9A is not available on ENCORE database.

81 RBPs can affect the gene expression of PDE9A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDE9A	ENSG00000160191.13	95.14750	394.24970	-2.05090	33.90570	32.57030	HepG2	SSB
PDE9A	ENSG00000160191.13	86.48630	358.17830	-2.05010	22.30030	20.45650	HepG2	U2AF1
PDE9A	ENSG00000160191.13	191.32400	487.33530	-1.34890	19.52950	18.51460	HepG2	SRSF1
PDE9A	ENSG00000160191.13	131.35670	347.60920	-1.40400	18.91370	17.79820	HepG2	ZNF622
PDE9A	ENSG00000160191.13	153.94100	454.90180	-1.56320	17.60910	16.02920	HepG2	MAGOH
PDE9A	ENSG00000160191.13	138.84950	405.20740	-1.54510	16.20820	14.52210	HepG2	CIRBP
PDE9A	ENSG00000160191.13	197.58900	448.44970	-1.18240	15.23190	14.14770	HepG2	PTBP1
PDE9A	ENSG00000160191.13	114.18140	356.39000	-1.64210	15.00770	13.36370	HepG2	SF3A3
PDE9A	ENSG00000160191.13	111.95780	286.26730	-1.35440	14.31140	12.97920	HepG2	ZC3H8
PDE9A	ENSG00000160191.13	120.37400	305.14660	-1.34200	13.18890	12.02600	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDE9A is not available on ENCORE database.

7 RBPs can affect the splicing of PDE9A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PDE9A	ENSG00000160191.13	chr21	+	44106301	44106372			44073888	44073993	44108026	44108104	-0.33900	0.00019	0.01173	excluded	HepG2	HNRNPU
MXE	PDE9A	ENSG00000160191.13	chr21	+	44108026	44108104	44152179	44152234	44073888	44073993	44153465	44153536	0.43000	0.00020	0.00897	1included	HepG2	HNRNPU
MXE	PDE9A	ENSG00000160191.13	chr21	+	44151879	44152059	44152179	44152234	44119077	44119121	44153465	44153536	0.26300	0.00032	0.07355	1included	HepG2	SLTM
SE	PDE9A	ENSG00000160191.13	chr21	+	44151879	44152059			44119077	44119121	44152179	44152234	-0.55300	0.00038	0.01150	excluded	HepG2	SRSF1
MXE	PDE9A	ENSG00000160191.13	chr21	+	44106301	44106372	44108026	44108104	44073888	44073993	44119077	44119121	-0.15700	0.00089	0.02052	2included	HepG2	FTO
MXE	PDE9A	ENSG00000160191.13	chr21	+	44151879	44152059	44152179	44152234	44119077	44119121	44153465	44153536	0.25300	0.00094	0.05127	1included	HepG2	DDX6
SE	PDE9A	ENSG00000160191.13	chr21	+	44151879	44152059			44119077	44119121	44152179	44152234	0.23200	0.00117	0.03071	included	HepG2	HNRNPK
MXE	PDE9A	ENSG00000160191.13	chr21	+	44151879	44152059	44152179	44152234	44119077	44119121	44153465	44153536	-0.29400	0.00520	0.07959	2included	HepG2	SRSF1
MXE	PDE9A	ENSG00000160191.13	chr21	+	44108026	44108104	44152179	44152234	44073888	44073993	44153465	44153536	0.33700	0.01901	0.08933	1included	HepG2	U2AF2

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDE9A

General Information

Functions

Localization

Domains (AlphaFold: PDE9A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDE9A is not avaliable on ENCORE database.

14 proteins are bound to PDE9A RNA:

eCLIP assay for PDE9A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDE9A is not available on ENCORE database.

81 RBPs can affect the gene expression of PDE9A :

The Knockdown/knockout RNA-Seq assay for PDE9A is not available on ENCORE database.

7 RBPs can affect the splicing of PDE9A :

The Knockdown/knockout RNA-Seq assay for PDE9A is not avaliable on ENCORE database.