NDUFS4

General Information

Gene Name : NDUFS4
Gene ID : ENSG00000164258.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NDUFS4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NDUFS4	ENSG00000164258.11	62.03	61.16	61.59	ENCSR000AEF
HepG2	NDUFS4	ENSG00000164258.11	61.90	79.65	70.78	ENCSR985KAT
K562	NDUFS4	ENSG00000164258.11	52.17	56.73	54.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NDUFS4 is not avaliable on ENCORE database.

Proteins bound to RNA

NDUFS4 RNA is bound by 17 proteins.

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eCLIP assay for NDUFS4 is not avaliable on ENCORE database.

17 proteins are bound to NDUFS4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	52899281	52899332	+	5'-UTR,CDS,intron-Proximal	3.24177	13.61786	K562	DDX3X
chr5	52979035	52979096	+	3'-UTR,CDS	5.62303	12.68958	HepG2	LARP4
chr5	52954380	52954397	+	3'-UTR,CDS,intron-Distal,intron-Proximal	6.44076	11.12815	K562	RPS3
chr5	52942217	52942236	+	3'-UTR,CDS,intron-Proximal	4.52772	10.94373	K562	RPS3
chr5	52913337	52913464	+	intron-Distal	4.83720	10.21863	HepG2	PTBP1
chr5	52924670	52924738	+	intron-Distal	5.26109	9.68086	K562	EXOSC5
chr5	52913101	52913188	+	intron-Distal	5.47805	9.44534	K562	PTBP1
chr5	52856482	52856560	+	5'-UTR,CDS	3.21202	8.75414	K562	DDX3X
chr5	52874585	52874679	+	intron-Distal	5.46184	8.50063	K562	PTBP1
chr5	52913269	52913323	+	intron-Distal	5.34653	8.42544	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for NDUFS4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NDUFS4 is not available on ENCORE database.
71 RBPs can affect the levels of NDUFS4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.

71 RBPs can affect the gene expression of NDUFS4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NDUFS4	ENSG00000164258.7	399.92490	1025.77990	-1.35890	36.28670	34.76250	HepG2	PTBP1
NDUFS4	ENSG00000164258.7	339.68930	1089.92050	-1.68190	28.29670	26.46310	HepG2	MATR3
NDUFS4	ENSG00000164258.7	554.23350	1141.57620	-1.04250	23.87980	22.60220	HepG2	NELFE
NDUFS4	ENSG00000164258.7	1402.33070	797.76750	0.81370	18.95170	17.58890	K562	AGGF1
NDUFS4	ENSG00000164258.7	1569.15950	823.25130	0.93050	14.19310	13.00590	K562	PUS1
NDUFS4	ENSG00000164258.7	676.47770	1114.70360	-0.72050	13.13400	12.26890	HepG2	SRSF1
NDUFS4	ENSG00000164258.7	457.03520	840.82420	-0.87950	12.72340	10.61920	K562	MATR3
NDUFS4	ENSG00000164258.7	476.96850	860.97450	-0.85210	11.47480	10.57010	HepG2	SSB
NDUFS4	ENSG00000164258.7	698.43390	1063.25640	-0.60630	9.30590	8.27510	HepG2	RECQL
NDUFS4	ENSG00000164258.7	605.94120	1083.87890	-0.83900	9.41680	8.22100	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.

12 RBPs can affect the splicing of NDUFS4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	NDUFS4	ENSG00000164258.7	chr5	+	52900553	52900725			52899281	52899360	52942062	52942235	0.07600	0.00026	included	HepG2	PTBP1
SE	NDUFS4	ENSG00000164258.7	chr5	+	52900553	52900725			52899281	52899360	52942062	52942235	0.10800	0.00000	included	HepG2	MATR3
SE	NDUFS4	ENSG00000164258.7	chr5	+	52900553	52900725			52899281	52899360	52942062	52942235	0.07100	0.00010	included	HepG2	DDX6
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52942062	52942235	52954380	52954454	52900553	52900725	52978947	52979168	0.13400	0.00000	1included	HepG2	PTBP1
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52942004	52942235	52899281	52899360	52978947	52979168	0.51800	0.00001	1included	K562	AQR
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52954380	52954454	52899281	52899360	52978947	52979168	0.05500	0.00000	1included	K562	AQR
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52942023	52942235	52899281	52899360	52978947	52979168	0.49000	0.00003	1included	K562	AQR
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52942062	52942235	52899281	52899360	52978947	52979168	0.06800	0.00000	1included	K562	AQR
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52954335	52954454	52899281	52899360	52978947	52979168	0.06300	0.00000	1included	K562	AQR
MXE	NDUFS4	ENSG00000164258.7	chr5	+	52900534	52900725	52942012	52942235	52899281	52899360	52978947	52979168	0.50200	0.00003	1included	K562	AQR

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NDUFS4

General Information

Functions

Localization

Domains (AlphaFold: NDUFS4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NDUFS4 is not avaliable on ENCORE database.

17 proteins are bound to NDUFS4 RNA:

eCLIP assay for NDUFS4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.

71 RBPs can affect the gene expression of NDUFS4 :

The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.

12 RBPs can affect the splicing of NDUFS4 :

The Knockdown/knockout RNA-Seq assay for NDUFS4 is not avaliable on ENCORE database.