NAT9

General Information

Gene Name : NAT9
Gene ID : ENSG00000109065.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NAT9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NAT9	ENSG00000109065.11	11.27	17.99	14.63	ENCSR000AEF
HepG2	NAT9	ENSG00000109065.11	35.12	24.42	29.77	ENCSR985KAT
K562	NAT9	ENSG00000109065.11	28.83	24.92	26.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NAT9 is not avaliable on ENCORE database.

Proteins bound to RNA

NAT9 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for NAT9 is not avaliable on ENCORE database.

23 proteins are bound to NAT9 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	72768162	72768286	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.29376	22.17023	HepG2	PRPF8
chr17	72769153	72769232	-	CDS,intron-Distal,intron-Proximal	5.59139	18.50654	K562	SF3B4
chr17	72768162	72768284	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.50267	17.93848	K562	PRPF8
chr17	72768170	72768296	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.12609	15.88035	K562	BUD13
chr17	72767234	72767357	-	3'-UTR,intron-Distal	4.64281	14.74404	K562	UPF1
chr17	72769705	72769800	-	CDS,intron-Distal,intron-Proximal	3.85482	14.42334	HepG2	PPIG
chr17	72769168	72769234	-	CDS,intron-Distal,intron-Proximal	4.04075	12.83177	HepG2	SF3A3
chr17	72768983	72769031	-	intron-Distal,intron-Proximal	5.41716	12.77088	HepG2	PRPF8
chr17	72768175	72768222	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.92355	12.50830	K562	AQR
chr17	72769191	72769208	-	intron-Distal,intron-Proximal	4.95403	11.73939	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 57 entries

eCLIP assay for NAT9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NAT9 is not available on ENCORE database.
85 RBPs can affect the levels of NAT9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.

85 RBPs can affect the gene expression of NAT9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NAT9	ENSG00000109065.7	632.44790	1091.29850	-0.78700	15.33150	14.41050	HepG2	SRSF1
NAT9	ENSG00000109065.7	541.27520	251.20290	1.10740	12.37920	11.23500	HepG2	BOP1
NAT9	ENSG00000109065.7	1807.90210	1131.79190	0.67560	11.83690	10.91950	HepG2	RBM22
NAT9	ENSG00000109065.7	137.83820	367.32940	-1.41410	12.07930	10.38850	K562	G3BP2
NAT9	ENSG00000109065.7	1214.29960	781.61300	0.63550	11.54830	10.31740	K562	DDX47
NAT9	ENSG00000109065.7	695.20650	415.79950	0.74150	10.96180	9.95050	HepG2	TRIM56
NAT9	ENSG00000109065.7	734.37810	414.79160	0.82400	11.49690	9.85290	K562	EIF3G
NAT9	ENSG00000109065.7	655.95160	380.32220	0.78630	10.60970	9.55870	HepG2	UTP3
NAT9	ENSG00000109065.7	1022.63890	539.61210	0.92220	10.35560	8.84680	K562	TARDBP
NAT9	ENSG00000109065.7	617.08860	980.85710	-0.66860	9.57650	8.63530	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.

24 RBPs can affect the splicing of NAT9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	NAT9	ENSG00000109065.7	chr17	-	72771760	72771991	72771760	72771846	72772405	72772462	-0.05600	0.00096	shorter	HepG2	RBM22
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.29400	0.00005	included	HepG2	U2AF2
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.40200	0.00001	included	HepG2	PRPF8
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.15700	0.00009	included	HepG2	IGF2BP3
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.16400	0.00007	included	HepG2	PCBP1
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.22600	0.00000	included	HepG2	QKI
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.19300	0.00000	included	HepG2	TAF15
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.20900	0.00000	included	HepG2	NCBP2
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.18100	0.00000	included	HepG2	SF3B4
RI	NAT9	ENSG00000109065.7	chr17	-	72768098	72768416	72768098	72768193	72768356	72768416	0.14500	0.00021	included	HepG2	SRSF9

Showing 1 to 10 of 35 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NAT9

General Information

Functions

Localization

Domains (AlphaFold: NAT9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NAT9 is not avaliable on ENCORE database.

23 proteins are bound to NAT9 RNA:

eCLIP assay for NAT9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.

85 RBPs can affect the gene expression of NAT9 :

The Knockdown/knockout RNA-Seq assay for NAT9 is not available on ENCORE database.

24 RBPs can affect the splicing of NAT9 :

The Knockdown/knockout RNA-Seq assay for NAT9 is not avaliable on ENCORE database.