KDM4C

General Information

Gene Name : KDM4C
Gene ID : ENSG00000107077.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KDM4C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KDM4C	ENSG00000107077.18	14.55	13.62	14.09	ENCSR000AEF
HepG2	KDM4C	ENSG00000107077.18	13.76	17.13	15.45	ENCSR985KAT
K562	KDM4C	ENSG00000107077.18	8.13	8.59	8.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KDM4C is not avaliable on ENCORE database.

Proteins bound to RNA

KDM4C RNA is bound by 32 proteins.

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eCLIP assay for KDM4C is not avaliable on ENCORE database.

32 proteins are bound to KDM4C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	6849503	6849586	+	5'-UTR,CDS,intron-Proximal	4.57061	28.95421	HepG2	BCLAF1
chr9	6993620	6993704	+	intron-Distal	6.25846	20.89530	HepG2	RBFOX2
chr9	6919256	6919314	+	intron-Distal	6.48403	20.34407	HepG2	PTBP1
chr9	6925403	6925529	+	5'-UTR,intron-Distal	6.48222	19.36052	HepG2	PCBP2
chr9	6919264	6919310	+	intron-Distal	6.23400	16.32680	K562	PTBP1
chr9	6986413	6986489	+	3'-UTR,CDS	5.30800	16.08161	HepG2	BCLAF1
chr9	6893093	6893164	+	CDS,intron-Proximal	3.29107	15.25977	HepG2	BCLAF1
chr9	7013900	7014002	+	3'-UTR,CDS,intron-Proximal	3.70498	15.25431	HepG2	BCLAF1
chr9	6814708	6814746	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27315	14.48007	HepG2	BCLAF1
chr9	7015858	7015931	+	CDS,intron-Proximal	3.91182	14.30125	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 152 entries

eCLIP assay for KDM4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KDM4C is not available on ENCORE database.
75 RBPs can affect the levels of KDM4C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KDM4C is not available on ENCORE database.

75 RBPs can affect the gene expression of KDM4C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KDM4C	ENSG00000107077.13	711.45630	1309.91670	-0.88060	20.57680	19.53930	HepG2	SRSF1
KDM4C	ENSG00000107077.13	766.66060	1341.49300	-0.80720	17.04720	15.92560	HepG2	NELFE
KDM4C	ENSG00000107077.13	410.81780	870.86040	-1.08390	15.86660	14.52560	HepG2	HNRNPA1
KDM4C	ENSG00000107077.13	644.45850	1091.72700	-0.76050	14.49630	13.28590	HepG2	UTP3
KDM4C	ENSG00000107077.13	672.50180	1041.67130	-0.63130	11.96020	10.77420	HepG2	CKAP4
KDM4C	ENSG00000107077.13	769.79620	1295.28250	-0.75070	10.73940	9.66850	HepG2	PUF60
KDM4C	ENSG00000107077.13	957.66120	1374.99980	-0.52180	10.55480	9.55510	HepG2	PUM1
KDM4C	ENSG00000107077.13	777.72200	1169.69910	-0.58880	10.12490	9.26250	HepG2	SSB
KDM4C	ENSG00000107077.13	647.30860	996.84720	-0.62290	9.52100	8.41790	HepG2	DKC1
KDM4C	ENSG00000107077.13	851.49940	1249.44660	-0.55320	8.82430	7.81720	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KDM4C is not available on ENCORE database.

11 RBPs can affect the splicing of KDM4C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	KDM4C	ENSG00000107077.13	chr9	+	6814630	6814745	6849506	6849700	6805598	6805774	6880011	6880061	-0.22500	0.00000	0.00000	2included	HepG2	HNRNPUL1
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	0.28200	0.00001	0.00915	included	HepG2	LIN28B
SE	KDM4C	ENSG00000107077.13	chr9	+	6805598	6805774			6792971	6793132	6814630	6814745	-0.08300	0.00009	0.00172	excluded	HepG2	U2AF2
SE	KDM4C	ENSG00000107077.13	chr9	+	6981841	6982765			6980924	6981118	6984165	6984404	0.31000	0.00010	0.01846	included	HepG2	PCBP2
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	0.18700	0.00017	0.00274	included	K562	AQR
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	-0.13800	0.00025	0.09589	excluded	K562	SMNDC1
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	0.24100	0.00031	0.00807	included	K562	SRSF1
SE	KDM4C	ENSG00000107077.13	chr9	+	6981841	6982765			6980924	6981118	6984165	6984404	0.13200	0.00038	0.04910	included	HepG2	SSB
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	0.16800	0.00053	0.04871	included	HepG2	G3BP1
SE	KDM4C	ENSG00000107077.13	chr9	+	7105401	7105500			7103684	7103870	7128065	7128236	0.20300	0.00089	0.02322	included	HepG2	SRSF1

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KDM4C

General Information

Functions

Localization

Domains (AlphaFold: KDM4C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KDM4C is not avaliable on ENCORE database.

32 proteins are bound to KDM4C RNA:

eCLIP assay for KDM4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KDM4C is not available on ENCORE database.

75 RBPs can affect the gene expression of KDM4C :

The Knockdown/knockout RNA-Seq assay for KDM4C is not available on ENCORE database.

11 RBPs can affect the splicing of KDM4C :

The Knockdown/knockout RNA-Seq assay for KDM4C is not avaliable on ENCORE database.