ITFG1

General Information

Gene Name : ITFG1
Gene ID : ENSG00000129636.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITFG1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITFG1	ENSG00000129636.12	23.05	20.17	21.61	ENCSR000AEF
HepG2	ITFG1	ENSG00000129636.12	48.80	86.31	67.56	ENCSR985KAT
K562	ITFG1	ENSG00000129636.12	36.67	41.11	38.89	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITFG1 is not avaliable on ENCORE database.

Proteins bound to RNA

ITFG1 RNA is bound by 29 proteins.

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eCLIP assay for ITFG1 is not avaliable on ENCORE database.

29 proteins are bound to ITFG1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	47494897	47494991	-	5'-UTR,CDS,intron-Distal	5.45909	400.00000	HepG2	DDX3X
chr16	47494849	47494888	-	CDS,intron-Distal	5.16733	47.51244	HepG2	DDX3X
chr16	47494789	47494839	-	CDS,intron-Distal	6.84246	31.14351	HepG2	DDX3X
chr16	47278571	47278624	-	intron-Distal	4.77061	16.94758	HepG2	HNRNPL
chr16	47278529	47278571	-	intron-Distal	4.44681	13.61511	HepG2	HNRNPL
chr16	47189314	47189403	-	3'-UTR,intron-Distal,intron-Proximal	5.81753	12.37476	HepG2	FUBP3
chr16	47431176	47431261	-	intron-Distal	4.16719	11.17441	HepG2	PCBP2
chr16	47278329	47278430	-	intron-Distal	3.66632	10.54997	HepG2	HNRNPL
chr16	47278340	47278427	-	intron-Distal	5.28326	10.01120	K562	HNRNPL
chr16	47189302	47189429	-	3'-UTR,intron-Distal,intron-Proximal	6.08589	9.17142	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 85 entries

eCLIP assay for ITFG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITFG1 is not available on ENCORE database.
102 RBPs can affect the levels of ITFG1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITFG1 is not available on ENCORE database.

102 RBPs can affect the gene expression of ITFG1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITFG1	ENSG00000129636.8	4966.63990	2873.43370	0.78940	45.29560	43.77850	HepG2	ZNF622
ITFG1	ENSG00000129636.8	5327.55440	3043.85110	0.80750	33.29250	31.38250	HepG2	AUH
ITFG1	ENSG00000129636.8	5381.75770	2754.92470	0.96600	29.50590	27.53500	HepG2	CALR
ITFG1	ENSG00000129636.8	1614.34430	2621.22750	-0.69930	27.29060	25.29250	HepG2	ILF2
ITFG1	ENSG00000129636.8	1910.10290	3216.89060	-0.75200	25.21840	23.69820	HepG2	PCBP1
ITFG1	ENSG00000129636.8	4935.02370	2382.90400	1.05020	25.05000	23.29270	HepG2	TARDBP
ITFG1	ENSG00000129636.8	2233.59650	3642.89130	-0.70570	22.54560	21.29210	HepG2	NELFE
ITFG1	ENSG00000129636.8	4230.93510	2259.92880	0.90460	18.10440	16.52880	HepG2	CPSF6
ITFG1	ENSG00000129636.8	5182.20800	3494.61440	0.56830	17.30990	16.01680	HepG2	ETF1
ITFG1	ENSG00000129636.8	2946.28540	2005.86570	0.55460	17.23490	15.80720	HepG2	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 111 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITFG1 is not available on ENCORE database.

5 RBPs can affect the splicing of ITFG1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ITFG1	ENSG00000129636.8	chr16	-	47484264	47484364	47462714	47462809	47485306	47485381	0.11200	0.00000	0.00015	included	K562	HNRNPC
A3SS	ITFG1	ENSG00000129636.8	chr16	-	47196450	47196575	47196450	47196512	47252778	47252857	-0.07100	0.00031	0.01498	shorter	HepG2	U2AF1
A3SS	ITFG1	ENSG00000129636.8	chr16	-	47189582	47189828	47189582	47189689	47192783	47192901	0.06000	0.00035	0.00273	longer	K562	AQR
SE	ITFG1	ENSG00000129636.8	chr16	-	47484264	47484364	47462714	47462809	47485306	47485381	-0.11000	0.00046	0.06635	excluded	K562	DROSHA
A3SS	ITFG1	ENSG00000129636.8	chr16	-	47294455	47294676	47294455	47294606	47345150	47345323	0.07600	0.00129	0.04698	longer	K562	U2AF2

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITFG1

General Information

Functions

Localization

Domains (AlphaFold: ITFG1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITFG1 is not avaliable on ENCORE database.

29 proteins are bound to ITFG1 RNA:

eCLIP assay for ITFG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITFG1 is not available on ENCORE database.

102 RBPs can affect the gene expression of ITFG1 :

The Knockdown/knockout RNA-Seq assay for ITFG1 is not available on ENCORE database.

5 RBPs can affect the splicing of ITFG1 :

The Knockdown/knockout RNA-Seq assay for ITFG1 is not avaliable on ENCORE database.