GGA1

General Information

Gene Name : GGA1
Gene ID : ENSG00000100083.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GGA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GGA1	ENSG00000100083.18	14.75	21.48	18.12	ENCSR000AEF
HepG2	GGA1	ENSG00000100083.18	31.41	18.49	24.95	ENCSR985KAT
K562	GGA1	ENSG00000100083.18	30.67	21.26	25.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GGA1 is not avaliable on ENCORE database.

Proteins bound to RNA

GGA1 RNA is bound by 23 proteins.

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eCLIP assay for GGA1 is not avaliable on ENCORE database.

23 proteins are bound to GGA1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	38016251	38016369	+	CDS,intron-Proximal	4.63340	39.83568	HepG2	PPIG
chr22	38016243	38016362	+	CDS,intron-Proximal	3.23011	17.18019	K562	ZNF622
chr22	38012928	38013014	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.96273	16.65240	HepG2	PPIG
chr22	38016243	38016373	+	CDS,intron-Proximal	3.73578	15.57224	HepG2	GRWD1
chr22	38016286	38016366	+	CDS	4.11974	14.38228	K562	UCHL5
chr22	38019333	38019403	+	CDS,intron-Proximal	3.50239	12.82053	HepG2	PPIG
chr22	38016248	38016371	+	CDS,intron-Proximal	3.69833	12.48866	K562	DDX24
chr22	38019403	38019472	+	CDS	4.08029	11.88486	HepG2	PPIG
chr22	38013014	38013076	+	3'-UTR,CDS,intron-Proximal	3.45982	10.84333	HepG2	PPIG
chr22	38026046	38026172	+	CDS	3.23028	10.47301	HepG2	PABPN1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 91 entries

eCLIP assay for GGA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GGA1 is not available on ENCORE database.
95 RBPs can affect the levels of GGA1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GGA1 is not available on ENCORE database.

95 RBPs can affect the gene expression of GGA1 :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GGA1	ENSG00000100083.14	550.95900	1862.62510	-1.75730	34.33110	33.07320	HepG2	SRSF1
GGA1	ENSG00000100083.14	1415.50190	677.00920	1.06400	34.79290	32.88700	HepG2	SAFB2
GGA1	ENSG00000100083.14	845.32300	1981.28640	-1.22890	25.23090	23.65030	K562	AQR
GGA1	ENSG00000100083.14	1698.84130	949.36890	0.83940	21.94250	20.18950	HepG2	HNRNPF
GGA1	ENSG00000100083.14	1636.12120	760.24090	1.10570	20.68900	19.14300	HepG2	HNRNPU
GGA1	ENSG00000100083.14	1265.56120	681.46850	0.89300	18.35930	16.71250	HepG2	DNAJC21
GGA1	ENSG00000100083.14	1121.65820	675.54760	0.73140	13.85420	12.51140	HepG2	DNAJC2
GGA1	ENSG00000100083.14	1918.24250	1328.91780	0.52940	13.35490	11.97620	HepG2	HNRNPL
GGA1	ENSG00000100083.14	1578.56300	896.12150	0.81670	12.36020	11.21750	HepG2	BOP1
GGA1	ENSG00000100083.14	946.74990	1447.22650	-0.61220	11.84970	10.74510	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GGA1 is not available on ENCORE database.

20 RBPs can affect the splicing of GGA1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GGA1	ENSG00000100083.14	chr22	+	38015806	38016026	38014454	38014553	38016244	38016282	0.12500	0.00000	0.00025	included	HepG2	HNRNPK
SE	GGA1	ENSG00000100083.14	chr22	+	38015806	38016026	38014454	38014553	38016244	38016282	0.15700	0.00000	0.00022	included	K562	HNRNPK
A3SS	GGA1	ENSG00000100083.14	chr22	+	38016794	38016920	38016819	38016920	38016213	38016368	0.25900	0.00000	0.00000	longer	K562	U2AF2
A3SS	GGA1	ENSG00000100083.14	chr22	+	38016794	38016920	38016819	38016920	38016244	38016368	0.22600	0.00000	0.00019	longer	HepG2	U2AF2
A3SS	GGA1	ENSG00000100083.14	chr22	+	38016794	38016920	38016819	38016920	38016244	38016368	0.20000	0.00000	0.00000	longer	HepG2	U2AF1
A5SS	GGA1	ENSG00000100083.14	chr22	+	38012928	38013055	38012928	38013004	38014454	38014553	0.40200	0.00002	0.00402	longer	HepG2	QKI
RI	GGA1	ENSG00000100083.14	chr22	+	38019339	38019571	38019339	38019474	38019558	38019571	0.05700	0.00011	0.00266	included	HepG2	PCBP1
A5SS	GGA1	ENSG00000100083.14	chr22	+	38012928	38013055	38012928	38013004	38014454	38014553	0.35800	0.00012	0.01165	longer	HepG2	HNRNPK
SE	GGA1	ENSG00000100083.14	chr22	+	38020975	38021083	38019558	38019640	38025468	38025533	-0.40200	0.00024	0.05287	excluded	HepG2	UCHL5
A5SS	GGA1	ENSG00000100083.14	chr22	+	38012928	38013071	38012928	38013004	38014454	38014553	-0.28400	0.00024	0.02709	shorter	HepG2	RBM22

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GGA1

General Information

Functions

Localization

Domains (AlphaFold: GGA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GGA1 is not avaliable on ENCORE database.

23 proteins are bound to GGA1 RNA:

eCLIP assay for GGA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GGA1 is not available on ENCORE database.

95 RBPs can affect the gene expression of GGA1 :

The Knockdown/knockout RNA-Seq assay for GGA1 is not available on ENCORE database.

20 RBPs can affect the splicing of GGA1 :

The Knockdown/knockout RNA-Seq assay for GGA1 is not avaliable on ENCORE database.