DDX39A

General Information

Gene Name : DDX39A
Gene ID : ENSG00000123136.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DDX39A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DDX39A	ENSG00000123136.14	25.68	76.96	51.32	ENCSR000AEF
HepG2	DDX39A	ENSG00000123136.14	80.66	40.73	60.69	ENCSR985KAT
K562	DDX39A	ENSG00000123136.14	128.17	94.04	111.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DDX39A is not avaliable on ENCORE database.

Proteins bound to RNA

DDX39A RNA is bound by 34 proteins.

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eCLIP assay for DDX39A is not avaliable on ENCORE database.

34 proteins are bound to DDX39A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	14521101	14521209	-	CDS,intron-Distal,intron-Proximal	4.19006	42.66788	K562	SF3B4
chr19	14521758	14521765	-	intron-Distal,intron-Proximal	5.50588	36.69527	K562	AQR
chr19	14521765	14521793	-	intron-Distal,intron-Proximal	5.24353	35.26789	K562	AQR
chr19	14521796	14521801	-	intron-Distal,intron-Proximal	5.21656	33.86141	K562	AQR
chr19	14521372	14521475	-	intron-Distal,intron-Proximal	4.80557	29.13116	K562	SF3B4
chr19	14520965	14521012	-	intron-Distal,intron-Proximal	3.89664	25.31738	K562	AQR
chr19	14520957	14521014	-	intron-Distal,intron-Proximal	5.78760	24.71289	K562	RBM15
chr19	14522272	14522334	-	CDS,intron-Distal,intron-Proximal	6.97116	23.26545	HepG2	PRPF8
chr19	14521108	14521205	-	CDS,intron-Distal,intron-Proximal	3.67688	21.59628	K562	EFTUD2
chr19	14523282	14523361	-	CDS,intron-Distal,intron-Proximal	6.76117	21.35451	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 142 entries

eCLIP assay for DDX39A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DDX39A is not available on ENCORE database.
119 RBPs can affect the levels of DDX39A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DDX39A is not available on ENCORE database.

119 RBPs can affect the gene expression of DDX39A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DDX39A	ENSG00000123136.10	5386.83010	2031.45200	1.40680	42.23290	40.06290	K562	PUS1
DDX39A	ENSG00000123136.10	3522.42740	1968.66170	0.83930	32.61090	30.74690	K562	AGGF1
DDX39A	ENSG00000123136.10	3378.69330	1455.07540	1.21530	27.95560	25.58450	K562	PRPF8
DDX39A	ENSG00000123136.10	3160.46590	1793.09330	0.81760	25.45290	23.73060	K562	FXR1
DDX39A	ENSG00000123136.10	2651.24070	1358.69220	0.96430	23.88720	22.01450	K562	PTBP1
DDX39A	ENSG00000123136.10	517.04330	979.39460	-0.92160	19.76030	18.74070	HepG2	SRFBP1
DDX39A	ENSG00000123136.10	727.26540	349.23140	1.05820	18.31300	17.00000	HepG2	SF3B4
DDX39A	ENSG00000123136.10	3746.37430	1979.42070	0.92030	18.13810	16.58890	K562	RBM15
DDX39A	ENSG00000123136.10	803.45590	336.19500	1.25680	17.96190	16.33780	HepG2	HNRNPK
DDX39A	ENSG00000123136.10	3652.11900	2048.49470	0.83410	16.94890	15.07460	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DDX39A is not available on ENCORE database.

43 RBPs can affect the splicing of DDX39A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	DDX39A	ENSG00000123136.10	chr19	-	14521232	14521417	14520553	14521146	14521800	14521984	0.08500	0.00020	included	K562	AKAP8L
SE	DDX39A	ENSG00000123136.10	chr19	-	14520347	14520409	14520114	14520259	14520553	14520685	-0.09100	0.00002	excluded	K562	AQR
SE	DDX39A	ENSG00000123136.10	chr19	-	14521232	14521417	14520553	14521146	14521800	14521984	0.05100	0.00008	included	K562	EIF4G2
SE	DDX39A	ENSG00000123136.10	chr19	-	14521232	14521417	14520553	14521146	14521800	14521984	0.11200	0.00000	included	K562	AGGF1
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14520553	14520793	14520553	14520685	14521027	14521146	0.23500	0.00000	longer	K562	AGGF1
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14523362	14523523	14523362	14523490	14523824	14524036	0.13300	0.00000	longer	K562	AGGF1
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14520553	14520793	14520553	14520685	14521027	14521146	0.25200	0.00002	longer	HepG2	SF3A3
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14520553	14520793	14520553	14520685	14521027	14521146	0.15000	0.00000	longer	K562	EFTUD2
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14520553	14520793	14520553	14520685	14521027	14521146	0.09900	0.00071	longer	K562	RBM22
A3SS	DDX39A	ENSG00000123136.10	chr19	-	14520553	14520793	14520553	14520685	14521027	14521146	0.27800	0.00000	longer	K562	AKAP8L

Showing 1 to 10 of 117 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DDX39A

General Information

Functions

Localization

Domains (AlphaFold: DDX39A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DDX39A is not avaliable on ENCORE database.

34 proteins are bound to DDX39A RNA:

eCLIP assay for DDX39A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DDX39A is not available on ENCORE database.

119 RBPs can affect the gene expression of DDX39A :

The Knockdown/knockout RNA-Seq assay for DDX39A is not available on ENCORE database.

43 RBPs can affect the splicing of DDX39A :

The Knockdown/knockout RNA-Seq assay for DDX39A is not avaliable on ENCORE database.