CYFIP1

General Information

Gene Name : CYFIP1
Gene ID : ENSG00000273749.4
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CYFIP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CYFIP1	ENSG00000273749.4	10.68	15.43	13.05	ENCSR000AEF
HepG2	CYFIP1	ENSG00000273749.4	41.94	28.51	35.23	ENCSR985KAT
K562	CYFIP1	ENSG00000273749.4	22.99	19.05	21.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CYFIP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CYFIP1 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for CYFIP1 is not avaliable on ENCORE database.

25 proteins are bound to CYFIP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	22955878	22955942	+	5'-UTR,intron-Distal,intron-Proximal	8.25983	76.07391	HepG2	RBFOX2
chr15	22955837	22955878	+	5'-UTR,intron-Distal	7.57730	50.53796	HepG2	RBFOX2
chr15	22956031	22956091	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.56198	27.05193	HepG2	RBFOX2
chr15	23003469	23003551	+	3'-UTR	6.22641	24.15382	HepG2	SUB1
chr15	22956104	22956157	+	3'-UTR,CDS,intron-Distal	4.84165	21.78362	HepG2	RBFOX2
chr15	22908714	22908781	+	intron-Distal	6.41860	17.92721	K562	EIF4G2
chr15	22955642	22955697	+	intron-Distal	4.68601	16.47398	HepG2	RBFOX2
chr15	22928407	22928511	+	3'-UTR,CDS,intron-Proximal	3.64181	10.81930	HepG2	PPIG
chr15	22928074	22928160	+	3'-UTR,CDS,intron-Proximal	4.46597	10.68651	K562	SF3B4
chr15	22955786	22955818	+	5'-UTR,intron-Distal	5.46686	10.00219	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 82 entries

eCLIP assay for CYFIP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CYFIP1 is not available on ENCORE database.
80 RBPs can affect the levels of CYFIP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CYFIP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of CYFIP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CYFIP1	ENSG00000068793.13	3542.15070	1854.13480	0.93380	35.86310	33.87930	K562	AGGF1
CYFIP1	ENSG00000068793.13	1350.51190	2381.07340	-0.81810	27.69090	26.44680	HepG2	SSB
CYFIP1	ENSG00000068793.13	895.00930	1573.00100	-0.81350	14.98450	13.50520	K562	PTBP1
CYFIP1	ENSG00000068793.13	883.69960	1632.80060	-0.88570	15.15190	13.14070	K562	EIF4A3
CYFIP1	ENSG00000068793.13	2425.89140	1722.22140	0.49410	11.79540	10.72750	HepG2	ACO1
CYFIP1	ENSG00000068793.13	1054.47600	1509.49300	-0.51750	10.52210	9.35280	HepG2	ZC3H8
CYFIP1	ENSG00000068793.13	3527.15150	2040.30810	0.78960	9.57000	8.64520	HepG2	AKAP1
CYFIP1	ENSG00000068793.13	1161.02500	1698.04390	-0.54850	9.53820	8.49570	K562	FXR1
CYFIP1	ENSG00000068793.13	2657.25720	1864.26660	0.51120	9.54390	8.46660	K562	RBM15
CYFIP1	ENSG00000068793.13	3609.50480	2742.55220	0.39620	8.86280	8.10580	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CYFIP1 is not available on ENCORE database.

10 RBPs can affect the splicing of CYFIP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.21000	0.00000	0.00001	included	HepG2	QKI
SE	CYFIP1	ENSG00000068793.13	chr15	+	22925975	22926065			22925776	22925899	22928128	22928206	-0.15600	0.00000	0.00009	excluded	HepG2	SF3A3
MXE	CYFIP1	ENSG00000068793.13	chr15	+	22925776	22925899	22925975	22926065	22892662	22892781	22928128	22928206	0.31400	0.00000	0.00448	1included	K562	HLTF
MXE	CYFIP1	ENSG00000068793.13	chr15	+	22925776	22925899	22925975	22926065	22892662	22892781	22928128	22928206	0.22900	0.00002	0.00104	1included	K562	PRPF8
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.11100	0.00005	0.00444	included	HepG2	SF3B4
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955142	22955280	22956437	22956585	0.08800	0.00010	0.01819	included	HepG2	SSB
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.15100	0.00022	0.03571	included	K562	RBM22
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.09600	0.00042	0.01908	included	K562	TARDBP
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.10300	0.00080	0.01727	included	K562	SRSF1
SE	CYFIP1	ENSG00000068793.13	chr15	+	22956038	22956186			22955132	22955280	22956437	22956585	0.07000	0.00153	0.07613	included	HepG2	NCBP2

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CYFIP1

General Information

Functions

Localization

Domains (AlphaFold: CYFIP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CYFIP1 is not avaliable on ENCORE database.

25 proteins are bound to CYFIP1 RNA:

eCLIP assay for CYFIP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CYFIP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of CYFIP1 :

The Knockdown/knockout RNA-Seq assay for CYFIP1 is not available on ENCORE database.

10 RBPs can affect the splicing of CYFIP1 :

The Knockdown/knockout RNA-Seq assay for CYFIP1 is not avaliable on ENCORE database.