COPZ1

General Information

Gene Name : COPZ1
Gene ID : ENSG00000111481.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COPZ1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COPZ1	ENSG00000111481.9	129.60	120.13	124.86	ENCSR000AEF
HepG2	COPZ1	ENSG00000111481.9	130.88	169.57	150.22	ENCSR985KAT
K562	COPZ1	ENSG00000111481.9	200.13	197.13	198.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COPZ1 is not avaliable on ENCORE database.

Proteins bound to RNA

COPZ1 RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for COPZ1 is not avaliable on ENCORE database.

30 proteins are bound to COPZ1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	54745017	54745117	+	3'-UTR	4.83046	400.00000	K562	UPF1
chr12	54745272	54745336	+	3'-UTR	4.72298	87.22470	K562	UPF1
chr12	54745456	54745509	+	3'-UTR	5.85580	69.39203	K562	UPF1
chr12	54744605	54744662	+	3'-UTR	3.37637	66.39661	K562	UPF1
chr12	54745215	54745272	+	3'-UTR	3.62829	65.58598	K562	UPF1
chr12	54745399	54745450	+	3'-UTR	5.52068	60.26689	K562	UPF1
chr12	54745525	54745544	+	3'-UTR	5.87956	59.26476	K562	UPF1
chr12	54744662	54744693	+	3'-UTR	4.51604	57.88353	K562	UPF1
chr12	54745544	54745562	+	3'-UTR	5.81190	57.16234	K562	UPF1
chr12	54745351	54745399	+	3'-UTR	5.89718	56.81194	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 123 entries

eCLIP assay for COPZ1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COPZ1 is not available on ENCORE database.
94 RBPs can affect the levels of COPZ1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COPZ1 is not available on ENCORE database.

94 RBPs can affect the gene expression of COPZ1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COPZ1	ENSG00000111481.5	1036.88600	2792.07210	-1.42910	66.42190	64.16190	HepG2	CELF1
COPZ1	ENSG00000111481.5	1629.05410	3065.13420	-0.91190	34.10990	32.62370	HepG2	PTBP1
COPZ1	ENSG00000111481.5	12495.30200	7829.41820	0.67430	30.77830	28.96950	K562	AGGF1
COPZ1	ENSG00000111481.5	1872.13140	3191.19860	-0.76940	26.02130	24.52340	HepG2	SF3B4
COPZ1	ENSG00000111481.5	2426.66770	4492.33500	-0.88850	22.30970	20.69150	K562	HNRNPC
COPZ1	ENSG00000111481.5	2147.56590	3358.34420	-0.64500	21.52330	20.47100	HepG2	SRFBP1
COPZ1	ENSG00000111481.5	2248.79150	3557.52020	-0.66170	20.01490	18.64750	HepG2	ETF1
COPZ1	ENSG00000111481.5	1968.10140	3319.61400	-0.75420	19.18690	17.74970	HepG2	QKI
COPZ1	ENSG00000111481.5	3378.60030	5283.98560	-0.64520	18.98070	17.50820	K562	FXR1
COPZ1	ENSG00000111481.5	654.15850	1470.41590	-1.16850	17.33640	15.68190	HepG2	RRP9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 110 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COPZ1 is not available on ENCORE database.

22 RBPs can affect the splicing of COPZ1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	COPZ1	ENSG00000111481.5	chr12	+	54734330	54734399			54718910	54718965	54735989	54736071	-0.05500	0.00005	excluded	HepG2	HNRNPK
SE	COPZ1	ENSG00000111481.5	chr12	+	54737008	54737100			54735989	54736071	54739243	54739299	-0.05600	0.00007	excluded	HepG2	U2AF2
SE	COPZ1	ENSG00000111481.5	chr12	+	54735950	54736071			54734330	54734399	54739243	54739299	0.50200	0.00010	included	K562	AQR
SE	COPZ1	ENSG00000111481.5	chr12	+	54736974	54737100			54735915	54736071	54739243	54739299	-0.07500	0.00000	excluded	K562	AQR
SE	COPZ1	ENSG00000111481.5	chr12	+	54718866	54718965			54694985	54695164	54734330	54734399	-0.08600	0.00000	excluded	K562	HNRNPU
SE	COPZ1	ENSG00000111481.5	chr12	+	54734246	54734399			54718912	54718965	54735989	54736071	-0.06900	0.00000	excluded	K562	HNRNPK
MXE	COPZ1	ENSG00000111481.5	chr12	+	54737008	54737100	54739243	54739299	54735989	54736071	54741550	54741628	0.19200	0.00009	1included	K562	DROSHA
MXE	COPZ1	ENSG00000111481.5	chr12	+	54735950	54736071	54739243	54739299	54734330	54734399	54741550	54741628	0.06200	0.00000	1included	K562	AQR
MXE	COPZ1	ENSG00000111481.5	chr12	+	54734330	54734399	54735989	54736071	54718922	54718965	54743403	54743442	-0.05800	0.00012	2included	HepG2	HNRNPK
MXE	COPZ1	ENSG00000111481.5	chr12	+	54735989	54736071	54737008	54737100	54718922	54718965	54739243	54739299	0.10100	0.00000	1included	K562	SF3B4

Showing 1 to 10 of 42 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COPZ1

General Information

Functions

Localization

Domains (AlphaFold: COPZ1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COPZ1 is not avaliable on ENCORE database.

30 proteins are bound to COPZ1 RNA:

eCLIP assay for COPZ1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COPZ1 is not available on ENCORE database.

94 RBPs can affect the gene expression of COPZ1 :

The Knockdown/knockout RNA-Seq assay for COPZ1 is not available on ENCORE database.

22 RBPs can affect the splicing of COPZ1 :

The Knockdown/knockout RNA-Seq assay for COPZ1 is not avaliable on ENCORE database.