CMC4

General Information

Gene Name : CMC4
Gene ID : ENSG00000182712.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CMC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CMC4	ENSG00000182712.15	7.78	9.92	8.85	ENCSR000AEF
HepG2	CMC4	ENSG00000182712.15	5.63	3.85	4.74	ENCSR985KAT
K562	CMC4	ENSG00000182712.15	9.98	8.32	9.15	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CMC4 is not avaliable on ENCORE database.

Proteins bound to RNA

CMC4 RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for CMC4 is not avaliable on ENCORE database.

1 proteins are bound to CMC4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	154290031	154290088	-	3'-UTR,intron-Distal	4.12414	4.12025	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CMC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CMC4 is not available on ENCORE database.
47 RBPs can affect the levels of CMC4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.

47 RBPs can affect the gene expression of CMC4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CMC4	ENSG00000182712.11	70.82230	131.72520	-0.89530	2.89960	1.90150	HepG2	CCAR1
CMC4	ENSG00000182712.11	58.10450	94.15260	-0.69640	2.07980	1.49130	HepG2	CKAP4
CMC4	ENSG00000182712.11	194.30670	124.17570	0.64590	1.98390	1.44540	HepG2	DDX3X
CMC4	ENSG00000182712.11	118.16940	60.95490	0.95490	3.61760	2.69380	HepG2	EIF4G2
CMC4	ENSG00000182712.11	52.78930	106.07230	-1.00670	2.50840	1.87290	HepG2	G3BP1
CMC4	ENSG00000182712.11	90.13510	48.99110	0.87950	2.23450	1.64930	HepG2	HNRNPA1
CMC4	ENSG00000182712.11	136.40010	71.57020	0.93030	3.41020	2.71980	HepG2	HNRNPLL
CMC4	ENSG00000182712.11	143.68250	54.12660	1.40840	8.24080	7.23580	HepG2	HNRNPU
CMC4	ENSG00000182712.11	87.51370	50.63860	0.78920	1.96790	1.34920	HepG2	IGF2BP1
CMC4	ENSG00000182712.11	82.23480	39.40820	1.06120	2.97270	1.73060	HepG2	KHDRBS1
CMC4	ENSG00000182712.11	40.02090	115.06530	-1.52360	4.66330	3.86120	HepG2	MATR3
CMC4	ENSG00000182712.11	24.45040	82.13980	-1.74820	3.40440	2.24090	HepG2	METAP2
CMC4	ENSG00000182712.11	145.38440	80.75140	0.84820	2.96840	2.13120	HepG2	MSI2
CMC4	ENSG00000182712.11	99.57460	37.77380	1.39830	4.25420	3.13780	HepG2	PABPC1
CMC4	ENSG00000182712.11	35.55900	92.82140	-1.38420	4.74400	3.41020	HepG2	PCBP2
CMC4	ENSG00000182712.11	86.37250	48.27790	0.83910	2.49210	1.78870	HepG2	PPIL4
CMC4	ENSG00000182712.11	48.47630	117.89340	-1.28210	4.20290	3.55950	HepG2	PTBP1
CMC4	ENSG00000182712.11	25.69400	77.94720	-1.60110	5.22050	4.56470	HepG2	RBM22
CMC4	ENSG00000182712.11	67.09440	115.85690	-0.78810	2.35710	1.72930	HepG2	RBM25
CMC4	ENSG00000182712.11	82.23820	39.10240	1.07250	2.96850	1.61260	HepG2	SART3
CMC4	ENSG00000182712.11	118.17410	58.54500	1.01320	4.47430	3.61480	HepG2	SLBP
CMC4	ENSG00000182712.11	43.20950	128.09390	-1.56780	3.88850	3.35160	HepG2	SRSF1
CMC4	ENSG00000182712.11	30.69040	60.28080	-0.97390	2.06610	1.51550	HepG2	SRSF5
CMC4	ENSG00000182712.11	38.16190	104.22360	-1.44950	5.14570	4.43510	HepG2	SRSF9
CMC4	ENSG00000182712.11	89.24900	36.13650	1.30430	4.67610	3.20990	HepG2	STIP1
CMC4	ENSG00000182712.11	123.99720	67.37170	0.88000	3.14300	2.14690	HepG2	SUPT6H
CMC4	ENSG00000182712.11	78.55650	43.43840	0.85470	2.10300	1.50270	HepG2	SUPV3L1
CMC4	ENSG00000182712.11	158.06150	85.37580	0.88850	2.16300	1.60110	HepG2	U2AF1
CMC4	ENSG00000182712.11	115.01220	46.24750	1.31420	2.61760	1.65950	HepG2	U2AF2
CMC4	ENSG00000182712.11	112.63120	37.19680	1.59830	7.04600	5.30200	HepG2	XPO5
CMC4	ENSG00000182712.11	41.67360	88.10850	-1.08010	2.63270	1.40780	HepG2	XRCC5
CMC4	ENSG00000182712.11	98.59030	42.76000	1.20510	4.04960	3.18050	HepG2	XRN2
CMC4	ENSG00000182712.11	131.78010	76.35970	0.78710	2.63740	1.48970	K562	AARS
CMC4	ENSG00000182712.11	219.55020	143.28060	0.61560	3.27890	2.18560	K562	AKAP8
CMC4	ENSG00000182712.11	79.50480	158.05630	-0.99130	1.89430	1.39140	K562	AQR
CMC4	ENSG00000182712.11	78.92520	41.91170	0.91300	2.38900	1.43570	K562	EIF3D
CMC4	ENSG00000182712.11	55.70620	92.35390	-0.72930	1.94670	1.42150	K562	FXR1
CMC4	ENSG00000182712.11	194.29110	116.57230	0.73690	3.75290	2.71040	K562	HNRNPU
CMC4	ENSG00000182712.11	237.28980	143.94640	0.72100	2.65480	1.84860	K562	KIF1C
CMC4	ENSG00000182712.11	220.41980	137.81050	0.67750	3.67760	2.37750	K562	MAK16
CMC4	ENSG00000182712.11	55.61330	95.07620	-0.77370	2.39430	1.54200	K562	MATR3
CMC4	ENSG00000182712.11	71.15120	141.76060	-0.99450	4.40720	3.40710	K562	MTPAP
CMC4	ENSG00000182712.11	150.58080	75.81760	0.98980	2.70200	1.72630	K562	PABPN1
CMC4	ENSG00000182712.11	38.64220	84.76270	-1.13330	3.35940	2.28280	K562	PCBP2
CMC4	ENSG00000182712.11	168.94460	103.14770	0.71170	2.98520	2.12810	K562	PPIG
CMC4	ENSG00000182712.11	179.86430	90.12010	0.99690	2.87730	1.39240	K562	PPP1R8
CMC4	ENSG00000182712.11	201.36160	131.07970	0.61920	3.11390	2.49040	K562	RBM15
CMC4	ENSG00000182712.11	74.13400	38.79450	0.93420	2.25170	1.51860	K562	RPS19
CMC4	ENSG00000182712.11	103.94390	155.41410	-0.58030	2.34830	1.59130	K562	SF3A3
CMC4	ENSG00000182712.11	93.16480	142.91820	-0.61730	2.24940	1.46180	K562	WDR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.

3 RBPs can affect the splicing of CMC4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CMC4	ENSG00000182712.11	chrX	-	154293893	154294064	154292240	154292308	154298968	154299637	0.40700	0.00002	0.00093	included	K562	SRSF1
SE	CMC4	ENSG00000182712.11	chrX	-	154294180	154294332	154293893	154294064	154298968	154299637	-0.54100	0.00036	0.00904	excluded	K562	SRSF1
SE	CMC4	ENSG00000182712.11	chrX	-	154293760	154293812	154292240	154292308	154298968	154299637	0.29600	0.00275	0.02854	included	K562	AQR
SE	CMC4	ENSG00000182712.11	chrX	-	154293893	154294064	154292240	154292308	154298968	154299637	0.38000	0.00210	0.06988	included	K562	PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CMC4

General Information

Functions

Localization

Domains (AlphaFold: CMC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CMC4 is not avaliable on ENCORE database.

1 proteins are bound to CMC4 RNA:

eCLIP assay for CMC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.

47 RBPs can affect the gene expression of CMC4 :

The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.

3 RBPs can affect the splicing of CMC4 :

The Knockdown/knockout RNA-Seq assay for CMC4 is not avaliable on ENCORE database.