ATXN7L3

General Information

Gene Name : ATXN7L3
Gene ID : ENSG00000087152.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATXN7L3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATXN7L3	ENSG00000087152.15	17.51	25.76	21.64	ENCSR000AEF
HepG2	ATXN7L3	ENSG00000087152.15	47.73	44.52	46.12	ENCSR985KAT
K562	ATXN7L3	ENSG00000087152.15	28.48	26.30	27.39	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATXN7L3 is not avaliable on ENCORE database.

Proteins bound to RNA

ATXN7L3 RNA is bound by 35 proteins.

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eCLIP assay for ATXN7L3 is not avaliable on ENCORE database.

35 proteins are bound to ATXN7L3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	42269177	42269274	-	3'-UTR,intron-Distal	5.44149	69.53958	K562	PUM2
chr17	42269888	42269972	-	3'-UTR,intron-Distal	6.49066	44.52542	K562	UPF1
chr17	42277231	42277361	-	intron-Distal,intron-Proximal	5.44307	40.45980	HepG2	PRPF4
chr17	42277239	42277352	-	intron-Distal,intron-Proximal	5.43477	32.43724	K562	GTF2F1
chr17	42270449	42270576	-	3'-UTR,intron-Distal	4.64399	31.25054	K562	UPF1
chr17	42269972	42270021	-	3'-UTR,intron-Distal	5.88539	25.37700	K562	UPF1
chr17	42270382	42270449	-	3'-UTR,intron-Distal	5.20634	21.79737	K562	UPF1
chr17	42276946	42277091	-	5'-UTR,intron-Distal	3.45699	21.21082	HepG2	FAM120A
chr17	42271277	42271374	-	3'-UTR,intron-Distal	4.76250	19.79568	HepG2	UPF1
chr17	42277289	42277356	-	intron-Distal,intron-Proximal	3.71491	19.46507	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 157 entries

eCLIP assay for ATXN7L3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATXN7L3 is not available on ENCORE database.
67 RBPs can affect the levels of ATXN7L3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATXN7L3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ATXN7L3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATXN7L3	ENSG00000087152.11	1632.60770	868.66820	0.91020	22.97440	21.34650	K562	FXR1
ATXN7L3	ENSG00000087152.11	4613.60570	3115.12100	0.56650	16.46480	15.19740	HepG2	ETF1
ATXN7L3	ENSG00000087152.11	3019.46730	1698.52160	0.82990	14.51490	13.31890	K562	AQR
ATXN7L3	ENSG00000087152.11	1399.32210	2195.59870	-0.64990	13.79860	12.68800	HepG2	TAF15
ATXN7L3	ENSG00000087152.11	977.38700	530.95470	0.88020	13.95790	11.92470	K562	SF3B4
ATXN7L3	ENSG00000087152.11	1558.37000	841.99300	0.88810	13.43190	11.65890	K562	TARDBP
ATXN7L3	ENSG00000087152.11	1521.53160	870.87150	0.80490	10.65280	9.16900	K562	PRPF8
ATXN7L3	ENSG00000087152.11	246.12860	510.89480	-1.05360	8.78430	7.37650	K562	G3BP2
ATXN7L3	ENSG00000087152.11	1836.81000	2442.64700	-0.41120	8.00980	7.30190	HepG2	SRSF1
ATXN7L3	ENSG00000087152.11	3769.47730	2940.79740	0.35810	7.97320	7.24470	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATXN7L3 is not available on ENCORE database.

5 RBPs can affect the splicing of ATXN7L3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42273401	42273468	42273401	42273447	42273763	42273786	0.22200	0.00000	0.00015	longer	K562	U2AF2
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42273401	42273468	42273401	42273447	42273763	42273786	0.49600	0.00000	0.00000	longer	HepG2	U2AF2
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42272135	42272235	42272135	42272207	42272464	42272508	0.09100	0.00000	0.00001	longer	K562	AQR
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42274965	42275175	42274965	42275098	42275387	42275498	0.20200	0.00000	0.00000	longer	K562	AQR
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42274595	42274783	42274595	42274767	42274965	42275098	0.28900	0.00000	0.00000	longer	K562	AQR
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42272464	42272549	42272464	42272508	42272786	42272855	0.19300	0.00000	0.00000	longer	K562	AQR
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42273401	42273468	42273401	42273447	42273763	42273786	0.51000	0.00000	0.00000	longer	HepG2	U2AF1
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42273401	42273468	42273401	42273447	42273763	42273786	0.17800	0.00001	0.00012	longer	K562	AQR
A3SS	ATXN7L3	ENSG00000087152.11	chr17	-	42273401	42273468	42273401	42273447	42273763	42273786	0.20900	0.00001	0.00065	longer	K562	U2AF1
RI	ATXN7L3	ENSG00000087152.11	chr17	-	42272018	42272235	42272018	42272042	42272135	42272235	0.18300	0.00002	0.00019	included	K562	AQR

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATXN7L3

General Information

Functions

Localization

Domains (AlphaFold: ATXN7L3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATXN7L3 is not avaliable on ENCORE database.

35 proteins are bound to ATXN7L3 RNA:

eCLIP assay for ATXN7L3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATXN7L3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ATXN7L3 :

The Knockdown/knockout RNA-Seq assay for ATXN7L3 is not available on ENCORE database.

5 RBPs can affect the splicing of ATXN7L3 :

The Knockdown/knockout RNA-Seq assay for ATXN7L3 is not avaliable on ENCORE database.