ATF6B

General Information

Gene Name : ATF6B
Gene ID : ENSG00000213676.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATF6B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATF6B	ENSG00000213676.12	25.22	51.95	38.59	ENCSR000AEF
HepG2	ATF6B	ENSG00000213676.12	39.96	31.04	35.50	ENCSR985KAT
K562	ATF6B	ENSG00000213676.12	92.27	87.82	90.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATF6B is not avaliable on ENCORE database.

Proteins bound to RNA

ATF6B RNA is bound by 38 proteins.

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eCLIP assay for ATF6B is not avaliable on ENCORE database.

38 proteins are bound to ATF6B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	32084305	32084428	-	CDS,intron-Distal,intron-Proximal	5.49786	43.37200	K562	AQR
chr6	32083874	32083987	-	intron-Distal	4.38501	24.85180	HepG2	PCBP2
chr6	32083682	32083842	-	CDS,intron-Distal	5.07180	23.66418	HepG2	PCBP2
chr6	32083297	32083382	-	3'-UTR,intron-Distal	4.69346	22.98691	K562	DDX6
chr6	32083700	32083865	-	CDS,intron-Distal	4.28617	21.75498	K562	PTBP1
chr6	32083395	32083509	-	3'-UTR,intron-Distal	4.99962	17.89285	K562	PABPC4
chr6	32083158	32083232	-	3'-UTR,intron-Distal,intron-Proximal	4.24126	16.96301	K562	DDX6
chr6	32083394	32083448	-	3'-UTR,intron-Distal	3.82023	14.49391	K562	DDX6
chr6	32083340	32083472	-	3'-UTR,intron-Distal	3.24985	14.23579	K562	FAM120A
chr6	32079511	32079613	-	intron-Distal	4.56149	13.12839	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 124 entries

eCLIP assay for ATF6B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATF6B is not available on ENCORE database.
125 RBPs can affect the levels of ATF6B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATF6B is not available on ENCORE database.

125 RBPs can affect the gene expression of ATF6B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATF6B	ENSG00000213676.6	2301.52270	959.11020	1.26270	38.02140	35.99950	HepG2	HNRNPU
ATF6B	ENSG00000213676.6	656.69230	1399.34160	-1.09150	27.51360	26.21720	HepG2	RBM22
ATF6B	ENSG00000213676.6	1736.54400	920.79890	0.91520	26.69890	25.55930	HepG2	SRSF1
ATF6B	ENSG00000213676.6	460.80540	947.16320	-1.03950	25.15140	23.73590	HepG2	ACO1
ATF6B	ENSG00000213676.6	542.63020	1402.92250	-1.37040	22.85550	21.20600	HepG2	GPKOW
ATF6B	ENSG00000213676.6	1635.11230	964.75070	0.76110	20.60300	19.20200	HepG2	PUS1
ATF6B	ENSG00000213676.6	1945.87590	1265.80490	0.62030	19.01600	17.74330	HepG2	PUM1
ATF6B	ENSG00000213676.6	1594.25660	832.84160	0.93670	18.47760	16.83860	HepG2	RBM25
ATF6B	ENSG00000213676.6	585.05540	1192.35780	-1.02720	17.42380	16.10100	HepG2	PUF60
ATF6B	ENSG00000213676.6	1677.77540	770.59400	1.12240	17.30630	15.71500	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 150 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATF6B is not available on ENCORE database.

6 RBPs can affect the splicing of ATF6B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084813	32084907	32084813	32084884	32085099	32085181	-0.11900	0.00000	0.00097	shorter	HepG2	SFPQ
SE	ATF6B	ENSG00000213676.6	chr6	-	32085363	32085471	32085099	32085181	32085635	32085668	-0.13700	0.00001	0.00031	excluded	HepG2	U2AF1
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084256	32084408	32084256	32084341	32084480	32084716	0.10800	0.00003	0.00030	longer	K562	AQR
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084813	32084907	32084813	32084884	32085099	32085181	-0.09600	0.00049	0.09566	shorter	K562	TARDBP
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084813	32084907	32084813	32084884	32085099	32085181	0.12300	0.00121	0.07814	longer	HepG2	SF3B4
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084813	32084907	32084813	32084884	32085099	32085181	-0.08600	0.00133	0.03364	shorter	HepG2	U2AF2
A3SS	ATF6B	ENSG00000213676.6	chr6	-	32084813	32084988	32084813	32084884	32085099	32085181	0.05100	0.01152	0.05962	longer	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATF6B

General Information

Functions

Localization

Domains (AlphaFold: ATF6B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATF6B is not avaliable on ENCORE database.

38 proteins are bound to ATF6B RNA:

eCLIP assay for ATF6B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATF6B is not available on ENCORE database.

125 RBPs can affect the gene expression of ATF6B :

The Knockdown/knockout RNA-Seq assay for ATF6B is not available on ENCORE database.

6 RBPs can affect the splicing of ATF6B :

The Knockdown/knockout RNA-Seq assay for ATF6B is not avaliable on ENCORE database.