ZNF839

General Information

Gene Name       : ZNF839
Gene ID             : ENSG00000022976.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF839)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF839ENSG00000022976.155.156.615.88ENCSR000AEF
HepG2ZNF839ENSG00000022976.153.544.854.20ENCSR985KAT
K562ZNF839ENSG00000022976.154.573.454.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF839 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF839 RNA is bound by 4 proteins.  







eCLIP assay for ZNF839 is not avaliable on ENCORE database.





4 proteins are bound to ZNF839 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14102792260102792486+5'-UTR,CDS,intron-Proximal3.546524.57180HepG2AQR
chr14102786204102786270+5'-UTR,CDS,intron-Distal4.406483.14758HepG2XRN2
chr14102786250102786314+5'-UTR,CDS,intron-Distal3.888083.48042HepG2NKRF
chr14102794840102794947+intron-Distal3.095933.54383HepG2HNRNPL
chr14102786807102786871+intron-Distal3.314045.28960K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF839 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF839 is not available on ENCORE database.

  • 62 RBPs can affect the levels of ZNF839.  








The Knockdown/knockout RNA-Seq assay for ZNF839 is not available on ENCORE database.





62 RBPs can affect the gene expression of ZNF839 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF839ENSG00000022976.11282.77360184.646500.614802.571701.70360HepG2BCLAF1
ZNF839ENSG00000022976.11162.31940247.07020-0.606102.802402.20060HepG2BOP1
ZNF839ENSG00000022976.11378.64690246.545400.618905.321304.45390HepG2CKAP4
ZNF839ENSG00000022976.11524.51960357.146000.554404.980804.16410HepG2CELF1
ZNF839ENSG00000022976.11323.53160195.494700.726702.927701.60310HepG2DDX27
ZNF839ENSG00000022976.11253.58590158.265000.680002.922301.49170HepG2DDX28
ZNF839ENSG00000022976.11339.21090208.959400.698903.180702.36000HepG2DDX55
ZNF839ENSG00000022976.11317.84550213.504900.574002.625502.02390HepG2DDX6
ZNF839ENSG00000022976.11280.01390188.517300.570702.621101.53930HepG2EFTUD2
ZNF839ENSG00000022976.11409.55490205.227300.996707.843606.88030HepG2EIF2S1
ZNF839ENSG00000022976.11227.07470156.656200.535502.332901.60760HepG2FUBP3
ZNF839ENSG00000022976.11367.50010228.851700.683204.012903.18950HepG2FXR1
ZNF839ENSG00000022976.11476.31490212.277901.1659011.198409.90430HepG2G3BP1
ZNF839ENSG00000022976.11211.03270134.613100.648502.389601.35380HepG2GRSF1
ZNF839ENSG00000022976.11307.79970235.417700.386702.193901.31670HepG2HDGF
ZNF839ENSG00000022976.11346.81670235.935700.555702.912002.20230HepG2HNRNPC
ZNF839ENSG00000022976.11373.66120214.986900.797405.336904.39010HepG2HNRNPK
ZNF839ENSG00000022976.11681.27850349.828600.9615017.6715016.10340HepG2HNRNPL
ZNF839ENSG00000022976.11353.84390217.038400.705103.577802.41800HepG2KHSRP
ZNF839ENSG00000022976.11402.54320228.931700.814105.596904.67430HepG2MAGOH
ZNF839ENSG00000022976.11367.69310209.823200.809205.477104.47160HepG2PABPC4
ZNF839ENSG00000022976.11317.68940218.520900.539703.543002.87470HepG2PCBP1
ZNF839ENSG00000022976.11276.72450209.045600.404501.994601.36050HepG2PPIL4
ZNF839ENSG00000022976.11178.93380252.41380-0.496402.579201.83010HepG2PRPF4
ZNF839ENSG00000022976.11243.69120161.149600.596602.265201.53120HepG2PRPF8
ZNF839ENSG00000022976.11420.91190222.363000.920509.693908.79220HepG2PTBP1
ZNF839ENSG00000022976.11235.76760363.50850-0.624604.039903.33430HepG2PUF60
ZNF839ENSG00000022976.11504.28510385.876000.386003.131402.51030HepG2PUM1
ZNF839ENSG00000022976.11448.90180251.142600.837809.787508.74890HepG2PUS1
ZNF839ENSG00000022976.11390.26090240.803700.696505.303704.47960HepG2QKI
ZNF839ENSG00000022976.11215.62590424.74540-0.978109.712508.87610HepG2RBM22
ZNF839ENSG00000022976.11156.80220286.47540-0.869505.986305.03780HepG2RPLP0
ZNF839ENSG00000022976.11181.76300266.40140-0.551502.357301.73610HepG2SF3A3
ZNF839ENSG00000022976.11167.38460242.88040-0.537102.134901.50930HepG2SF3B1
ZNF839ENSG00000022976.11379.36660231.491000.712505.764804.96400HepG2SF3B4
ZNF839ENSG00000022976.11316.96360243.413600.380802.102701.53100HepG2SMN1
ZNF839ENSG00000022976.11354.02850479.73270-0.438403.275702.74500HepG2SRFBP1
ZNF839ENSG00000022976.11325.70470217.209700.584403.756703.11980HepG2TAF15
ZNF839ENSG00000022976.11314.89870236.256400.414402.390601.73400HepG2UPF1
ZNF839ENSG00000022976.11334.22830242.845400.460702.753201.70750HepG2UTP18
ZNF839ENSG00000022976.11218.18310130.802900.738003.314702.10550HepG2XPO5
ZNF839ENSG00000022976.11169.40350249.09520-0.556203.090002.38760HepG2ZC3H8
ZNF839ENSG00000022976.11343.20170259.838100.401302.516201.98760HepG2ZNF622
ZNF839ENSG00000022976.11147.63950259.39530-0.813102.480601.93800K562AGGF1
ZNF839ENSG00000022976.11124.37490269.89820-1.117704.774903.90950K562AKAP8L
ZNF839ENSG00000022976.11425.26840256.627100.728607.020406.04900K562DDX47
ZNF839ENSG00000022976.11195.35040290.52000-0.572602.064601.31950K562DKC1
ZNF839ENSG00000022976.11209.19640102.006001.036104.104102.85220K562EIF3A
ZNF839ENSG00000022976.11199.49880122.842400.699503.353702.45290K562EIF4A3
ZNF839ENSG00000022976.11183.53520127.750900.522602.086101.54670K562FXR1
ZNF839ENSG00000022976.1175.16720218.95220-1.542405.325903.44130K562HNRNPA2B1
ZNF839ENSG00000022976.11257.36930140.537000.872805.083904.29630K562HNRNPC
ZNF839ENSG00000022976.11418.44360231.929900.851207.757005.89830K562HNRNPL
ZNF839ENSG00000022976.11273.02060197.481500.467202.381301.55250K562HNRNPU
ZNF839ENSG00000022976.11179.83540286.47980-0.671802.427901.66080K562KIF1C
ZNF839ENSG00000022976.11197.84940128.779900.619402.945901.99040K562MATR3
ZNF839ENSG00000022976.11105.49120224.93920-1.092402.217101.44850K562NAA15
ZNF839ENSG00000022976.11335.79380196.043400.776304.585503.51630K562PCBP3
ZNF839ENSG00000022976.11253.80860150.375900.755104.309703.30590K562POLR2G
ZNF839ENSG00000022976.11237.61130334.06310-0.491502.280101.54010K562PUF60
ZNF839ENSG00000022976.1170.71340267.76780-1.920907.590406.73680K562PUS1
ZNF839ENSG00000022976.11114.08430260.81410-1.192905.042204.26340K562RBM15
ZNF839ENSG00000022976.11242.74730136.090100.834803.956802.97700K562RPS19
ZNF839ENSG00000022976.1193.57320201.25340-1.104803.359301.95200K562SNRNP200
ZNF839ENSG00000022976.11204.28950124.389600.715603.411402.62220K562TARDBP
ZNF839ENSG00000022976.11176.31120119.988000.555102.210201.48530K562TIA1
ZNF839ENSG00000022976.11253.61010189.315600.421702.130301.38020K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF839 is not available on ENCORE database.





2 RBPs can affect the splicing of ZNF839 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEZNF839ENSG00000022976.11chr14+1028008901028009831028020251028021751027979751027981831028051521028052900.597000.000000.000331includedK562TRA2A
MXEZNF839ENSG00000022976.11chr14+1028008901028009831028020251028021751027979751027981831028051521028052900.335000.002000.079611includedK562IGF2BP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF839 is not avaliable on ENCORE database.