VOPP1

General Information

Gene Name       : VOPP1
Gene ID             : ENSG00000154978.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VOPP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VOPP1ENSG00000154978.1273.4496.2184.82ENCSR000AEF
HepG2VOPP1ENSG00000154978.1229.6331.1630.39ENCSR985KAT
K562VOPP1ENSG00000154978.1226.3420.9723.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VOPP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VOPP1 RNA is bound by 16 proteins.  







eCLIP assay for VOPP1 is not avaliable on ENCORE database.





16 proteins are bound to VOPP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr75553963055539706-3'-UTR,intron-Distal4.301655.87389HepG2UPF1
chr75554011655540185-3'-UTR,intron-Distal4.439233.95192HepG2UPF1
chr75553962955539753-3'-UTR,intron-Distal,intron-Proximal3.572083.44343HepG2AKAP1
chr75553966155539770-3'-UTR,intron-Distal3.828897.13820K562UPF1
chr75553837355538457-3'-UTR,intron-Distal4.434184.07810K562UPF1
chr75563990055639994-5'-UTR,CDS,intron-Distal,intron-Proximal3.384433.47285K562PRPF8
chr75563941955639517-5'-UTR,intron-Distal4.384345.36332HepG2CSTF2T
chr75563991955639990-5'-UTR,CDS,intron-Distal,intron-Proximal3.8737711.14388HepG2PRPF8
chr75564011355640218-5'-UTR,intron-Distal,intron-Proximal4.7417811.01276HepG2DDX3X
chr75563941055639536-5'-UTR,intron-Distal3.619658.58367HepG2PRPF4
chr75563933155639410-5'-UTR,intron-Distal3.333783.68924HepG2PRPF4
chr75555992955559988-CDS,intron-Distal,intron-Proximal3.804849.77953HepG2PRPF8
chr75555992155560012-CDS,intron-Distal,intron-Proximal4.223453.79199HepG2PPIG
chr75558700455587115-intron-Distal4.436384.20763HepG2U2AF2
chr75552911255529197-intron-Distal4.229673.93054HepG2LIN28B
chr75560499155605054-intron-Distal4.389894.12480HepG2HNRNPM
chr75553341055533479-intron-Distal3.772125.03940HepG2LIN28B
chr75553822755538294-intron-Distal,intron-Proximal3.664273.27222HepG2CSTF2T
chr75553641655536497-intron-Distal4.111374.12666HepG2HNRNPK
chr75553687455536960-intron-Distal4.061153.47103HepG2LIN28B
chr75551720855517280-intron-Distal4.505114.68055HepG2CSTF2T
chr75562791655627971-intron-Distal4.432283.97018HepG2HNRNPM
chr75560613355606192-intron-Distal4.313893.86368HepG2HNRNPM
chr75560566755605745-intron-Distal3.935864.86210HepG2HNRNPM
chr75555260455552672-intron-Distal4.834647.44079HepG2RBFOX2
chr75561789255617917-intron-Distal5.572797.42650HepG2XPO5
chr75561791755617947-intron-Distal5.9105711.78880HepG2XPO5
chr75561792355617997-intron-Distal3.712134.94813HepG2HNRNPM
chr75553823755538298-intron-Distal,intron-Proximal4.021063.39362HepG2CSTF2
chr75557327455573348-intron-Distal4.556128.48623HepG2PCBP2
chr75553241955532484-intron-Distal4.103363.98448HepG2IGF2BP1
chr75551740555517504-intron-Distal3.484795.45050HepG2CSTF2T
chr75561762355617692-intron-Distal4.550865.42395HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VOPP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VOPP1 is not available on ENCORE database.

  • 66 RBPs can affect the levels of VOPP1.  








The Knockdown/knockout RNA-Seq assay for VOPP1 is not available on ENCORE database.





66 RBPs can affect the gene expression of VOPP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VOPP1ENSG00000154978.8666.48300864.77960-0.375802.717501.65580HepG2AATF
VOPP1ENSG00000154978.81559.74000993.509800.6506015.2592014.07480HepG2ACO1
VOPP1ENSG00000154978.81913.855301400.707500.450203.261802.69100HepG2AKAP1
VOPP1ENSG00000154978.8579.074801158.97110-1.0010013.3881011.77650HepG2ASCC1
VOPP1ENSG00000154978.8977.53680629.570400.634706.565705.69060HepG2BOP1
VOPP1ENSG00000154978.8701.239001101.10130-0.651006.379505.23850HepG2CIRBP
VOPP1ENSG00000154978.8772.72010993.23240-0.362204.462803.65710HepG2CKAP4
VOPP1ENSG00000154978.8428.42880577.96430-0.431902.645301.97120HepG2CPSF6
VOPP1ENSG00000154978.8928.43080655.580300.501904.320003.00940HepG2CSTF2
VOPP1ENSG00000154978.81803.706601344.336300.424006.195405.30640HepG2CELF1
VOPP1ENSG00000154978.81632.584201152.599100.502203.904203.17980HepG2DDX6
VOPP1ENSG00000154978.8296.17680853.30120-1.5266037.3351035.11850HepG2DNAJC21
VOPP1ENSG00000154978.8708.11350845.67860-0.256102.303501.69660HepG2DNAJC2
VOPP1ENSG00000154978.8787.383701108.03810-0.492903.722003.04110HepG2EIF2S1
VOPP1ENSG00000154978.8448.96260684.39670-0.608204.527003.39100HepG2EIF3D
VOPP1ENSG00000154978.8827.197601192.22710-0.527403.217602.47880HepG2EIF4B
VOPP1ENSG00000154978.81221.884201426.08320-0.223002.283301.51020HepG2EIF4G1
VOPP1ENSG00000154978.8839.750401366.11740-0.702008.880907.45640HepG2EIF4G2
VOPP1ENSG00000154978.8458.06500611.66770-0.417203.146701.88820HepG2FAM120A
VOPP1ENSG00000154978.8351.67280578.98740-0.719302.500301.53780HepG2FTO
VOPP1ENSG00000154978.81549.245001235.465500.326402.147601.53430HepG2FXR1
VOPP1ENSG00000154978.8842.405901146.08810-0.444103.091702.39000HepG2G3BP1
VOPP1ENSG00000154978.8845.092501160.48830-0.457603.791502.98440HepG2HNRNPK
VOPP1ENSG00000154978.81283.09790951.869700.430706.402905.51200HepG2HNRNPU
VOPP1ENSG00000154978.8943.330501192.14580-0.337703.105102.34120HepG2IGF2BP1
VOPP1ENSG00000154978.8755.68160972.30840-0.363604.610203.68330HepG2ILF2
VOPP1ENSG00000154978.8761.34640947.11780-0.315002.382301.33490HepG2LARP7
VOPP1ENSG00000154978.8657.87160811.94350-0.303602.022501.32560HepG2MSI2
VOPP1ENSG00000154978.81122.482701433.47410-0.352803.923803.01500HepG2NOL12
VOPP1ENSG00000154978.8364.55260554.39170-0.604804.268003.34430HepG2NSUN2
VOPP1ENSG00000154978.8576.25730748.45560-0.377203.526002.66230HepG2PRPF4
VOPP1ENSG00000154978.81124.765901452.50770-0.368905.392304.62050HepG2PUM1
VOPP1ENSG00000154978.8907.713301451.47420-0.6772011.145009.84670HepG2PUM2
VOPP1ENSG00000154978.81725.001201018.000600.760804.915703.99070HepG2RAVER1
VOPP1ENSG00000154978.82116.616301441.699300.553905.871505.18650HepG2RBM22
VOPP1ENSG00000154978.8911.082101156.72810-0.344402.908602.21960HepG2RBM25
VOPP1ENSG00000154978.81568.804401309.688800.260302.158501.66880HepG2NELFE
VOPP1ENSG00000154978.8685.69510847.69920-0.306002.921202.26370HepG2SAFB2
VOPP1ENSG00000154978.81649.09360930.014100.826207.804906.63250HepG2SF3A3
VOPP1ENSG00000154978.8829.02200988.58940-0.254002.534101.91410HepG2SMN1
VOPP1ENSG00000154978.8466.14360688.53380-0.562802.890102.09000HepG2SNRNP70
VOPP1ENSG00000154978.8721.869501628.38240-1.1736029.4670028.28270HepG2SRFBP1
VOPP1ENSG00000154978.8922.982901189.44350-0.365904.436903.58810HepG2SRSF7
VOPP1ENSG00000154978.8828.098401040.41400-0.329303.699603.08190HepG2SRSF9
VOPP1ENSG00000154978.8348.37110609.49130-0.807007.605906.48030HepG2TARDBP
VOPP1ENSG00000154978.8718.01550925.02840-0.365503.216502.68390HepG2TIAL1
VOPP1ENSG00000154978.8456.49160933.18040-1.0316023.7258022.27440HepG2TRIM56
VOPP1ENSG00000154978.8260.22360613.65230-1.2377015.4150013.66260HepG2UCHL5
VOPP1ENSG00000154978.81186.87330796.292500.575709.689108.67890HepG2UTP3
VOPP1ENSG00000154978.81061.67190907.100200.226902.239901.73310HepG2ZNF622
VOPP1ENSG00000154978.81316.35840863.451500.6083011.1176010.07590K562AGGF1
VOPP1ENSG00000154978.8686.37520994.92760-0.535605.080203.35700K562CIRBP
VOPP1ENSG00000154978.8571.69440449.129600.348002.078701.39020K562CPSF6
VOPP1ENSG00000154978.8333.40010504.77280-0.598404.389702.66930K562DNAJC21
VOPP1ENSG00000154978.8298.84720477.46970-0.676003.121402.04500K562EIF3A
VOPP1ENSG00000154978.8414.43650601.28850-0.536903.563502.26240K562FKBP4
VOPP1ENSG00000154978.81034.91080833.706300.311802.822102.21190K562FXR1
VOPP1ENSG00000154978.8462.95170623.62050-0.429802.155601.54280K562G3BP2
VOPP1ENSG00000154978.8837.12980588.290900.508803.628102.54990K562HNRNPM
VOPP1ENSG00000154978.81207.72960969.522600.316902.263501.53990K562HSPD1
VOPP1ENSG00000154978.81168.04550953.473800.292702.180801.45850K562KIF1C
VOPP1ENSG00000154978.81433.220801068.135000.424104.500303.28340K562MBNL1
VOPP1ENSG00000154978.8983.33040748.687400.393202.122101.37270K562NAA15
VOPP1ENSG00000154978.8776.17030912.26910-0.233102.046601.39350K562NSUN2
VOPP1ENSG00000154978.81050.42270811.936800.371402.823101.99270K562PPIG
VOPP1ENSG00000154978.81203.33230868.170300.470905.874005.03760K562RBM15
VOPP1ENSG00000154978.8407.18480566.50820-0.476403.586602.45960K562RCC2
VOPP1ENSG00000154978.8575.48890750.57500-0.383202.054001.35530K562RPS19
VOPP1ENSG00000154978.8679.71190929.28280-0.451204.118203.26240K562SRSF1
VOPP1ENSG00000154978.8485.12990634.46410-0.387202.382701.51520K562TRIM56
VOPP1ENSG00000154978.8503.84040624.27580-0.309201.990101.30900K562U2AF2
VOPP1ENSG00000154978.8507.27700755.08900-0.573904.709303.34020K562UCHL5
VOPP1ENSG00000154978.81134.34680967.301200.229702.046001.42210K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VOPP1 is not available on ENCORE database.





1 RBPs can affect the splicing of VOPP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVOPP1ENSG00000154978.8chr7-5562958355629744555887645558882355639963556401470.219000.000100.03514includedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VOPP1 is not avaliable on ENCORE database.