USP4

General Information

Gene Name : USP4
Gene ID : ENSG00000114316.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USP4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP4	ENSG00000114316.12	51.07	48.07	49.57	ENCSR000AEF
HepG2	USP4	ENSG00000114316.12	18.82	18.94	18.88	ENCSR985KAT
K562	USP4	ENSG00000114316.12	17.82	18.98	18.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP4 is not avaliable on ENCORE database.

Proteins bound to RNA

USP4 RNA is bound by 11 proteins.

CanvasJS.com

eCLIP assay for USP4 is not avaliable on ENCORE database.

11 proteins are bound to USP4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	49362077	49362171	-	CDS,intron-Distal,intron-Proximal	5.27664	14.79448	HepG2	PRPF8
chr3	49335256	49335287	-	intron-Distal,intron-Proximal	5.77856	10.48996	K562	AQR
chr3	49372863	49372921	-	CDS,intron-Distal,intron-Proximal	6.08048	10.09256	HepG2	PRPF8
chr3	49335287	49335306	-	CDS,intron-Distal,intron-Proximal	5.59162	9.41643	K562	AQR
chr3	49339816	49339896	-	CDS,intron-Distal,intron-Proximal	3.95849	7.83545	HepG2	PPIG
chr3	49372915	49373024	-	CDS,intron-Distal	3.34992	6.60490	HepG2	BCLAF1
chr3	49338094	49338125	-	CDS,intron-Distal,intron-Proximal	4.14744	6.36347	HepG2	PPIG
chr3	49362071	49362135	-	intron-Distal,intron-Proximal	5.29256	6.22530	K562	AQR
chr3	49335262	49335332	-	CDS,intron-Distal,intron-Proximal	4.61056	5.93840	HepG2	PRPF8
chr3	49322231	49322288	-	CDS,intron-Distal,intron-Proximal	3.99204	5.93840	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for USP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP4 is not available on ENCORE database.
46 RBPs can affect the levels of USP4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for USP4 is not available on ENCORE database.

46 RBPs can affect the gene expression of USP4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP4	ENSG00000114316.8	934.39930	569.69130	0.71380	11.34750	10.53070	HepG2	SRSF1
USP4	ENSG00000114316.8	1049.32380	1748.30550	-0.73650	10.99310	9.35150	K562	PUF60
USP4	ENSG00000114316.8	1337.31280	1822.02290	-0.44620	7.12350	5.55790	K562	PUM2
USP4	ENSG00000114316.8	303.36910	481.45460	-0.66630	6.46540	5.37430	HepG2	PPIL4
USP4	ENSG00000114316.8	792.80530	574.83950	0.46370	5.53050	4.72970	HepG2	ACO1
USP4	ENSG00000114316.8	403.97550	674.01310	-0.73850	5.77580	4.59040	K562	RPS19
USP4	ENSG00000114316.8	752.51730	1089.15330	-0.53340	5.54220	4.46840	K562	GRSF1
USP4	ENSG00000114316.8	1040.83520	738.01890	0.49590	5.09600	4.27170	HepG2	CELF1
USP4	ENSG00000114316.8	655.65470	873.20320	-0.41340	4.78380	4.14580	HepG2	SSB
USP4	ENSG00000114316.8	1473.98700	1030.77040	0.51590	4.75870	4.07090	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP4 is not available on ENCORE database.

15 RBPs can affect the splicing of USP4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	USP4	ENSG00000114316.8	chr3	-	49362326	49362519	49362326	49362472	49363151	49363278	0.16800	0.00000	0.00000	longer	K562	AQR
A3SS	USP4	ENSG00000114316.8	chr3	-	49339816	49340019	49339816	49339975	49343147	49343343	0.23900	0.00000	0.00000	longer	K562	AQR
A3SS	USP4	ENSG00000114316.8	chr3	-	49316246	49316440	49316246	49316335	49318176	49318280	0.10600	0.00000	0.00004	longer	K562	AQR
A3SS	USP4	ENSG00000114316.8	chr3	-	49343147	49343356	49343147	49343321	49348052	49348170	0.12800	0.00002	0.00020	longer	K562	AQR
SE	USP4	ENSG00000114316.8	chr3	-	49355741	49355849	49348946	49349087	49362134	49362196	0.51400	0.00006	0.01879	included	HepG2	UCHL5
SE	USP4	ENSG00000114316.8	chr3	-	49348946	49349087	49348052	49348170	49362134	49362196	0.26200	0.00008	0.00252	included	K562	SRSF1
SE	USP4	ENSG00000114316.8	chr3	-	49316246	49316335	49315263	49315884	49318176	49318280	0.16300	0.00032	0.02604	included	HepG2	AKAP1
SE	USP4	ENSG00000114316.8	chr3	-	49348946	49349087	49348052	49348170	49362134	49362196	-0.33600	0.00037	0.01731	excluded	K562	TARDBP
SE	USP4	ENSG00000114316.8	chr3	-	49348946	49349087	49348052	49348170	49362134	49362196	-0.24700	0.00052	0.02306	excluded	K562	HNRNPU
SE	USP4	ENSG00000114316.8	chr3	-	49348946	49349087	49348052	49348170	49362134	49362196	-0.19600	0.00067	0.02521	excluded	K562	UTP18

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP4

General Information

Functions

Localization

Domains (AlphaFold: USP4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP4 is not avaliable on ENCORE database.

11 proteins are bound to USP4 RNA:

eCLIP assay for USP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP4 is not available on ENCORE database.

46 RBPs can affect the gene expression of USP4 :

The Knockdown/knockout RNA-Seq assay for USP4 is not available on ENCORE database.

15 RBPs can affect the splicing of USP4 :

The Knockdown/knockout RNA-Seq assay for USP4 is not avaliable on ENCORE database.