TUSC3

General Information

Gene Name : TUSC3
Gene ID : ENSG00000104723.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TUSC3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TUSC3	ENSG00000104723.20	0.00	0.07	0.04	ENCSR000AEF
HepG2	TUSC3	ENSG00000104723.20	0.10	0.25	0.17	ENCSR985KAT
K562	TUSC3	ENSG00000104723.20	51.81	47.89	49.85	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TUSC3 is not avaliable on ENCORE database.

Proteins bound to RNA

TUSC3 RNA is bound by 18 proteins.

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eCLIP assay for TUSC3 is not avaliable on ENCORE database.

18 proteins are bound to TUSC3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	15537842	15537962	+	intron-Distal	6.55075	23.02542	K562	EXOSC5
chr8	15605323	15605458	+	intron-Distal	5.67079	19.07464	K562	QKI
chr8	15540330	15540385	+	intron-Distal	5.78431	13.98859	K562	EXOSC5
chr8	15540006	15540094	+	intron-Distal	5.54221	11.00212	K562	EXOSC5
chr8	15541330	15541383	+	intron-Distal	5.30283	9.35180	K562	EXOSC5
chr8	15488128	15488216	+	intron-Distal	4.79226	8.06346	K562	KHSRP
chr8	15531260	15531334	+	CDS	4.23345	7.95584	K562	SND1
chr8	15576976	15577086	+	intron-Distal	3.13128	7.72509	K562	HNRNPL
chr8	15398148	15398289	+	intron-Distal,intron-Proximal	4.82945	7.46888	K562	NONO
chr8	15398000	15398062	+	CDS,intron-Distal	3.17046	7.35825	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 52 entries

eCLIP assay for TUSC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TUSC3 is not available on ENCORE database.
47 RBPs can affect the levels of TUSC3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TUSC3 is not available on ENCORE database.

47 RBPs can affect the gene expression of TUSC3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TUSC3	ENSG00000104723.16	195.79640	7.68610	4.67090	25.08700	23.97250	HepG2	SRFBP1
TUSC3	ENSG00000104723.16	102.37800	5.50770	4.21620	23.98340	22.65700	HepG2	SRSF9
TUSC3	ENSG00000104723.16	113.80130	6.80420	4.06390	14.94680	13.93840	HepG2	RBM22
TUSC3	ENSG00000104723.16	94.84770	7.54650	3.65160	14.97460	13.63270	HepG2	DDX3X
TUSC3	ENSG00000104723.16	1028.97260	1930.58500	-0.90780	14.68910	13.48580	K562	AQR
TUSC3	ENSG00000104723.16	68.43810	5.92540	3.52970	12.82830	11.67220	HepG2	PUF60
TUSC3	ENSG00000104723.16	2474.75090	1428.97400	0.79220	12.48130	11.37420	K562	PUS1
TUSC3	ENSG00000104723.16	58.17800	4.58690	3.66480	11.99940	11.06010	HepG2	ZNF622
TUSC3	ENSG00000104723.16	96.51250	5.62470	4.10080	11.79090	10.41180	HepG2	RAVER1
TUSC3	ENSG00000104723.16	938.59420	1624.64260	-0.79150	11.45980	8.62070	K562	DDX19B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TUSC3 is not available on ENCORE database.

11 RBPs can affect the splicing of TUSC3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	-0.31700	0.00000	0.00000	excluded	K562	SRSF1
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	-0.33000	0.00000	0.00000	excluded	K562	PRPF8
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	-0.26400	0.00000	0.00027	excluded	K562	FXR1
SE	TUSC3	ENSG00000104723.16	chr8	+	15615252	15615364			15605883	15605974	15621711	15621968	0.20400	0.00008	0.02087	included	K562	UPF1
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	0.19200	0.00018	0.09279	included	K562	SSB
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	-0.21200	0.00022	0.00571	excluded	K562	U2AF2
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605895	15605974	15621711	15621968	-0.27400	0.00032	0.00732	excluded	K562	HNRNPC
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605883	15605974	15621711	15621968	0.25400	0.00037	0.04435	included	K562	CPSF6
SE	TUSC3	ENSG00000104723.16	chr8	+	15615299	15615364			15605895	15605974	15621711	15621968	0.16000	0.00072	0.08925	included	K562	ZC3H8
MXE	TUSC3	ENSG00000104723.16	chr8	+	15605883	15605974	15615299	15615364	15600952	15601121	15615538	15615786	0.09400	0.00096	0.01867	1included	K562	SRSF1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TUSC3

General Information

Functions

Localization

Domains (AlphaFold: TUSC3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TUSC3 is not avaliable on ENCORE database.

18 proteins are bound to TUSC3 RNA:

eCLIP assay for TUSC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TUSC3 is not available on ENCORE database.

47 RBPs can affect the gene expression of TUSC3 :

The Knockdown/knockout RNA-Seq assay for TUSC3 is not available on ENCORE database.

11 RBPs can affect the splicing of TUSC3 :

The Knockdown/knockout RNA-Seq assay for TUSC3 is not avaliable on ENCORE database.