TFCP2

General Information

Gene Name       : TFCP2
Gene ID             : ENSG00000135457.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TFCP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TFCP2ENSG00000135457.927.7720.2324.00ENCSR000AEF
HepG2TFCP2ENSG00000135457.911.5219.4115.46ENCSR985KAT
K562TFCP2ENSG00000135457.925.4626.1725.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TFCP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TFCP2 RNA is bound by 12 proteins.  







eCLIP assay for TFCP2 is not avaliable on ENCORE database.





12 proteins are bound to TFCP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125148771951487787-3'-UTR,intron-Distal4.456218.92807K562TARDBP
chr125148757551487647-3'-UTR,intron-Distal4.604188.45580K562TARDBP
chr125156654851566755-5'-UTR,intron-Distal,intron-Proximal5.1375311.52576K562FUS
chr125156659951566649-5'-UTR,intron-Distal,intron-Proximal4.221607.32634HepG2PRPF4
chr125156656251566599-5'-UTR,intron-Distal,intron-Proximal4.637503.90256HepG2PRPF4
chr125156654851566647-5'-UTR,intron-Distal,intron-Proximal3.281776.37265K562CSTF2T
chr125156623651566284-5'-UTR,intron-Distal,intron-Proximal3.030783.31456K562TIA1
chr125156657551566712-5'-UTR,intron-Distal,intron-Proximal3.657356.68805HepG2FAM120A
chr125156637251566482-5'-UTR,intron-Distal3.911593.80037K562FUS
chr125156626851566373-5'-UTR,intron-Distal,intron-Proximal3.481857.48417HepG2PRPF4
chr125156652451566593-5'-UTR,intron-Distal,intron-Proximal4.329384.52089HepG2NCBP2
chr125156655951566685-5'-UTR,intron-Distal,intron-Proximal3.434097.91299K562GTF2F1
chr125156637351566445-5'-UTR,intron-Distal3.337694.55636HepG2PRPF4
chr125156629251566344-5'-UTR,intron-Distal,intron-Proximal4.255414.41148HepG2GTF2F1
chr125152052451520621-intron-Distal5.180038.82993HepG2SUGP2
chr125154121551541315-intron-Distal4.154354.36036HepG2SUGP2
chr125152101851521102-intron-Distal3.173834.63410HepG2SUGP2
chr125156569951565788-intron-Distal3.532573.01619K562FUS
chr125154127251541350-intron-Distal4.6450610.86699HepG2PCBP2
chr125154482951544962-intron-Distal4.036803.72005K562MATR3
chr125150688251507049-intron-Distal4.399104.85866HepG2QKI
chr125152128751521375-intron-Distal3.917505.54651HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TFCP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TFCP2 is not available on ENCORE database.

  • 58 RBPs can affect the levels of TFCP2.  








The Knockdown/knockout RNA-Seq assay for TFCP2 is not available on ENCORE database.





58 RBPs can affect the gene expression of TFCP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TFCP2ENSG00000135457.5334.26130493.00700-0.560603.245702.27170HepG2BCLAF1
TFCP2ENSG00000135457.5543.66290748.91880-0.462102.490001.57210HepG2CCAR1
TFCP2ENSG00000135457.5361.86870500.93680-0.469203.667602.86450HepG2DNAJC21
TFCP2ENSG00000135457.5345.75260496.51100-0.522105.227504.37610HepG2DNAJC2
TFCP2ENSG00000135457.5328.39870487.22370-0.569101.856801.35910HepG2EIF2S1
TFCP2ENSG00000135457.5883.33340524.162300.752804.929604.02790HepG2EIF4B
TFCP2ENSG00000135457.5574.51540738.62480-0.362502.204801.47230HepG2EIF4G2
TFCP2ENSG00000135457.5596.42160473.423900.333102.036601.32200HepG2EWSR1
TFCP2ENSG00000135457.5568.20820702.77110-0.306602.426701.75230HepG2HNRNPF
TFCP2ENSG00000135457.5394.35230558.81780-0.502904.944904.15420HepG2HNRNPU
TFCP2ENSG00000135457.5559.10230692.02860-0.307702.060401.42940HepG2IGF2BP1
TFCP2ENSG00000135457.5456.47220570.81400-0.322502.682301.96060HepG2ILF2
TFCP2ENSG00000135457.5610.99380774.98420-0.343002.662101.91460HepG2NOL12
TFCP2ENSG00000135457.5686.61030510.764900.426703.980103.27930HepG2PCBP1
TFCP2ENSG00000135457.5376.40800498.42100-0.405102.929002.17300HepG2PPIL4
TFCP2ENSG00000135457.5602.65270757.06130-0.329102.022101.42720HepG2RPLP0
TFCP2ENSG00000135457.5399.39940497.65250-0.317302.147601.56730HepG2SAFB2
TFCP2ENSG00000135457.5919.94700637.800500.528303.168402.44640HepG2SF3A3
TFCP2ENSG00000135457.5409.89430605.43550-0.562704.057403.21770HepG2SF3B1
TFCP2ENSG00000135457.5519.28740709.35880-0.450004.848903.96090HepG2SLBP
TFCP2ENSG00000135457.5652.59250837.38090-0.359703.623403.07350HepG2SRFBP1
TFCP2ENSG00000135457.5987.80790564.790100.8064014.1600013.26830HepG2SRSF1
TFCP2ENSG00000135457.5566.70920690.45050-0.284902.137801.51700HepG2SRSF7
TFCP2ENSG00000135457.5933.68750727.012900.360903.730403.15470HepG2SSB
TFCP2ENSG00000135457.5972.96720830.712900.227901.974001.43170HepG2SUCLG1
TFCP2ENSG00000135457.5340.82070547.84970-0.684808.081507.19660HepG2TRIM56
TFCP2ENSG00000135457.5243.58900328.05120-0.429501.969801.32970HepG2UCHL5
TFCP2ENSG00000135457.5816.98180546.095900.581007.519506.61060HepG2UTP3
TFCP2ENSG00000135457.5803.056001213.48050-0.5956010.091909.09750K562AGGF1
TFCP2ENSG00000135457.5409.07540680.80400-0.7349010.153707.37110K562AKAP1
TFCP2ENSG00000135457.51031.585401333.33250-0.370203.270202.17890K562AKAP8
TFCP2ENSG00000135457.5991.466701262.65710-0.348802.861902.19750K562AKAP8L
TFCP2ENSG00000135457.5928.673301157.96960-0.318402.552901.79850K562CPSF6
TFCP2ENSG00000135457.52244.218602709.61830-0.271902.358001.45950K562CELF1
TFCP2ENSG00000135457.5715.78240914.66560-0.353703.709702.15490K562DDX27
TFCP2ENSG00000135457.51057.92030864.173200.291702.208901.49220K562EIF3G
TFCP2ENSG00000135457.51184.640701516.40130-0.356202.899202.03010K562FIP1L1
TFCP2ENSG00000135457.51053.87270749.466500.491706.161205.31140K562FXR1
TFCP2ENSG00000135457.5727.78500934.41750-0.360602.806701.36210K562G3BP1
TFCP2ENSG00000135457.51004.045501293.08200-0.365003.976702.61720K562GLRX3
TFCP2ENSG00000135457.51362.536701963.78350-0.527306.698605.51490K562GRSF1
TFCP2ENSG00000135457.5742.820801224.28010-0.720803.305401.93730K562HNRNPA2B1
TFCP2ENSG00000135457.5919.022901244.28370-0.437105.294304.04440K562HNRNPU
TFCP2ENSG00000135457.5711.89360977.36990-0.457202.910601.85030K562IGF2BP2
TFCP2ENSG00000135457.5463.80740656.28110-0.500803.533201.84110K562ILF3
TFCP2ENSG00000135457.51066.199001340.08020-0.329802.549201.76200K562KIF1C
TFCP2ENSG00000135457.51251.249701027.170300.284602.150201.40490K562MAGOH
TFCP2ENSG00000135457.51024.507001359.50140-0.408105.809804.66700K562MTPAP
TFCP2ENSG00000135457.51082.710401510.56020-0.4804010.240608.92770K562NSUN2
TFCP2ENSG00000135457.5921.360001337.41360-0.537604.668503.58910K562PCBP3
TFCP2ENSG00000135457.5771.392801025.84220-0.411303.596102.67670K562POLR2G
TFCP2ENSG00000135457.5728.716001252.38380-0.7812010.231609.23260K562PUS1
TFCP2ENSG00000135457.5842.195501220.11480-0.534807.273306.34260K562RBM15
TFCP2ENSG00000135457.5897.91530685.537600.389202.316201.41060K562RPS3
TFCP2ENSG00000135457.5774.771201051.41640-0.440502.871701.87910K562SF3B1
TFCP2ENSG00000135457.51407.821801028.945900.452205.330204.18140K562SYNCRIP
TFCP2ENSG00000135457.5770.92180990.13720-0.361002.498301.82320K562TARDBP
TFCP2ENSG00000135457.5640.29100818.89640-0.355002.277101.43150K562TRIM56
TFCP2ENSG00000135457.51270.497301601.67650-0.334204.771803.85460K562UPF1
TFCP2ENSG00000135457.51017.411901370.50810-0.429804.445603.32430K562WDR3
TFCP2ENSG00000135457.51384.087801977.46510-0.514705.249103.99780K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TFCP2 is not available on ENCORE database.





2 RBPs can affect the splicing of TFCP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETFCP2ENSG00000135457.5chr12-515114535151153051510097515102035151240351512555-0.056000.000470.00641excludedK562AQR
SETFCP2ENSG00000135457.5chr12-514979375149812151497452514975465150030751500396-0.093000.003980.03857excludedK562AQR
SETFCP2ENSG00000135457.5chr12-514957175149580851493437514935625150030751500396-0.244000.000960.01651excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TFCP2 is not avaliable on ENCORE database.