TBC1D25

General Information

Gene Name : TBC1D25
Gene ID : ENSG00000068354.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBC1D25)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBC1D25	ENSG00000068354.15	4.39	7.09	5.74	ENCSR000AEF
HepG2	TBC1D25	ENSG00000068354.15	5.55	2.79	4.17	ENCSR985KAT
K562	TBC1D25	ENSG00000068354.15	5.42	4.12	4.77	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBC1D25 is not avaliable on ENCORE database.

Proteins bound to RNA

TBC1D25 RNA is bound by 2 proteins.

CanvasJS.com

eCLIP assay for TBC1D25 is not avaliable on ENCORE database.

2 proteins are bound to TBC1D25 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	48418642	48418785	+	CDS	4.77593	6.83406	K562	RBM15
chrX	48419360	48419455	+	3'-UTR	3.71959	3.19539	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for TBC1D25 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBC1D25 is not available on ENCORE database.
51 RBPs can affect the levels of TBC1D25.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.

51 RBPs can affect the gene expression of TBC1D25 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBC1D25	ENSG00000068354.11	653.72130	276.87010	1.23940	12.31990	10.83790	HepG2	SF3A3
TBC1D25	ENSG00000068354.11	476.13280	270.04890	0.81800	10.37560	9.48620	HepG2	ZNF622
TBC1D25	ENSG00000068354.11	342.18320	173.31060	0.98130	8.17100	6.96570	K562	SRSF1
TBC1D25	ENSG00000068354.11	474.03760	276.09840	0.77970	7.45010	6.69680	HepG2	RBM22
TBC1D25	ENSG00000068354.11	627.48010	386.27010	0.69990	8.01130	6.68430	K562	SF3A3
TBC1D25	ENSG00000068354.11	397.35860	231.89720	0.77690	7.51930	6.32700	HepG2	AKAP8L
TBC1D25	ENSG00000068354.11	351.70250	217.28030	0.69470	6.76710	5.75740	HepG2	HNRNPL
TBC1D25	ENSG00000068354.11	361.62460	186.31960	0.95660	7.06290	5.55130	K562	EFTUD2
TBC1D25	ENSG00000068354.11	330.00140	164.21620	1.00680	6.83440	5.27460	HepG2	SMNDC1
TBC1D25	ENSG00000068354.11	193.33100	95.60910	1.01580	6.39360	5.05570	K562	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.

5 RBPs can affect the splicing of TBC1D25 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TBC1D25	ENSG00000068354.11	chrX	+	48403256	48403411	48417284	48417412	48399720	48399830	48417545	48417734	-0.27700	0.00051	0.02497	2included	K562	AKAP8L
RI	TBC1D25	ENSG00000068354.11	chrX	+	48417284	48417734			48417284	48417412	48417545	48417734	0.15000	0.00054	0.00388	included	K562	AQR
A5SS	TBC1D25	ENSG00000068354.11	chrX	+	48399720	48399901			48399720	48399830	48403256	48403411	-0.27500	0.00109	0.07321	shorter	K562	HNRNPC
MXE	TBC1D25	ENSG00000068354.11	chrX	+	48403256	48403411	48417284	48417412	48399720	48399830	48417545	48417734	-0.26500	0.00111	0.02581	2included	HepG2	SRSF1
SE	TBC1D25	ENSG00000068354.11	chrX	+	48403256	48403411			48399720	48399830	48417284	48417414	-0.30500	0.00405	0.03919	excluded	K562	AQR
MXE	TBC1D25	ENSG00000068354.11	chrX	+	48403256	48403411	48417284	48417412	48399720	48399830	48417545	48417734	-0.19700	0.00650	0.08371	2included	K562	PUS1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBC1D25

General Information

Functions

Localization

Domains (AlphaFold: TBC1D25)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBC1D25 is not avaliable on ENCORE database.

2 proteins are bound to TBC1D25 RNA:

eCLIP assay for TBC1D25 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.

51 RBPs can affect the gene expression of TBC1D25 :

The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.

5 RBPs can affect the splicing of TBC1D25 :

The Knockdown/knockout RNA-Seq assay for TBC1D25 is not avaliable on ENCORE database.