SYDE2

General Information

Gene Name       : SYDE2
Gene ID             : ENSG00000097096.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYDE2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYDE2ENSG00000097096.81.591.221.41ENCSR000AEF
HepG2SYDE2ENSG00000097096.81.222.091.65ENCSR985KAT
K562SYDE2ENSG00000097096.82.352.632.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYDE2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SYDE2 RNA is bound by 3 proteins.  







eCLIP assay for SYDE2 is not avaliable on ENCORE database.





3 proteins are bound to SYDE2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr18562307985623159-3'-UTR,intron-Distal3.233064.08064K562KHSRP
chr18565596585656026-CDS,intron-Distal4.571164.15208K562RBM15
chr18565608185656202-CDS,intron-Distal5.0980311.14878K562PUM2
chr18566601185666096-CDS,intron-Distal4.816064.15208K562RBM15
chr18562511185625213-intron-Distal4.260483.89294K562KHSRP
chr18565007585650198-intron-Distal3.881263.02234K562KHSRP
chr18563994685640084-intron-Distal3.723513.24603K562KHSRP
chr18564014185640253-intron-Distal3.638553.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SYDE2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYDE2 is not available on ENCORE database.

  • 51 RBPs can affect the levels of SYDE2.  








The Knockdown/knockout RNA-Seq assay for SYDE2 is not available on ENCORE database.





51 RBPs can affect the gene expression of SYDE2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYDE2ENSG00000097096.882.31780152.98600-0.894103.271502.41720HepG2ASCC1
SYDE2ENSG00000097096.8150.95170224.74850-0.574202.951402.24590HepG2AUH
SYDE2ENSG00000097096.834.33370112.65850-1.714303.555902.49510HepG2BCCIP
SYDE2ENSG00000097096.865.61660119.95500-0.870402.902202.29060HepG2BOP1
SYDE2ENSG00000097096.880.53850131.70740-0.709602.817402.14730HepG2CKAP4
SYDE2ENSG00000097096.8102.12830168.02910-0.718302.293201.60080HepG2CNOT7
SYDE2ENSG00000097096.8188.15590110.124900.772703.404202.64930HepG2CPSF6
SYDE2ENSG00000097096.867.47170146.27340-1.116304.477203.73340HepG2EIF2S1
SYDE2ENSG00000097096.8171.73870258.03770-0.587402.906902.29340HepG2ETF1
SYDE2ENSG00000097096.862.05890128.72870-1.052604.499303.44030HepG2EWSR1
SYDE2ENSG00000097096.892.72290151.28900-0.706302.433101.80720HepG2G3BP1
SYDE2ENSG00000097096.861.06370124.83420-1.031603.489302.77640HepG2GPKOW
SYDE2ENSG00000097096.863.15650100.28880-0.667202.008801.48220HepG2HNRNPU
SYDE2ENSG00000097096.840.0717095.67680-1.255602.567401.55180HepG2METAP2
SYDE2ENSG00000097096.8114.40690171.54470-0.584402.444101.86560HepG2PCBP1
SYDE2ENSG00000097096.869.60030117.52920-0.755902.255501.31520HepG2PCBP2
SYDE2ENSG00000097096.881.17090174.55290-1.104606.377305.61390HepG2PTBP1
SYDE2ENSG00000097096.863.08360134.17230-1.088805.443204.63200HepG2PUS1
SYDE2ENSG00000097096.899.89420215.67250-1.110407.152906.41120HepG2RBM22
SYDE2ENSG00000097096.8103.79820168.59530-0.699802.484501.72480HepG2RPS3A
SYDE2ENSG00000097096.873.16100117.91620-0.688601.900601.30820HepG2SF3B1
SYDE2ENSG00000097096.8126.73140181.73250-0.520001.996201.48070HepG2SF3B4
SYDE2ENSG00000097096.861.90510104.15170-0.750602.452901.84180HepG2SMN1
SYDE2ENSG00000097096.8298.28110189.689200.652903.984703.44300HepG2SRSF1
SYDE2ENSG00000097096.856.1627097.44770-0.795002.363601.89470HepG2TIAL1
SYDE2ENSG00000097096.863.1559098.32050-0.638601.857901.37780HepG2TRIM56
SYDE2ENSG00000097096.832.2857065.15970-1.013101.951701.31420HepG2UCHL5
SYDE2ENSG00000097096.843.60170101.04260-1.212502.201001.31100HepG2UPF2
SYDE2ENSG00000097096.8656.66850374.906000.808509.175208.21840K562AGGF1
SYDE2ENSG00000097096.8527.96230390.120300.436402.423101.81170K562AKAP8L
SYDE2ENSG00000097096.8291.14380163.649800.831005.490804.39230K562CPSF6
SYDE2ENSG00000097096.8120.70170225.06130-0.898905.930804.93740K562EIF2S2
SYDE2ENSG00000097096.8156.81070336.53770-1.1017010.654909.55360K562FXR1
SYDE2ENSG00000097096.8432.21090299.581800.528701.886601.31510K562G3BP2
SYDE2ENSG00000097096.8404.18910242.763200.735406.045304.49320K562HNRNPA1
SYDE2ENSG00000097096.8532.50460256.289501.054905.263103.39490K562HNRNPA2B1
SYDE2ENSG00000097096.8105.33260174.06140-0.724602.874801.31870K562LSM11
SYDE2ENSG00000097096.8318.93900212.920900.582903.920402.97200K562MTPAP
SYDE2ENSG00000097096.8447.14420224.150600.996204.467303.12790K562PABPN1
SYDE2ENSG00000097096.8119.21870190.57750-0.676802.982901.49620K562PHF6
SYDE2ENSG00000097096.8117.58380206.33100-0.811303.458802.61910K562PRPF8
SYDE2ENSG00000097096.8105.80970175.01800-0.726002.980702.03710K562PSIP1
SYDE2ENSG00000097096.8174.76720317.44930-0.861104.287203.47720K562PTBP1
SYDE2ENSG00000097096.8621.82080386.794600.684806.133105.36360K562PUS1
SYDE2ENSG00000097096.8619.03550376.954000.715507.588106.63600K562RBM15
SYDE2ENSG00000097096.8193.83210304.53500-0.651802.666101.84190K562RBM22
SYDE2ENSG00000097096.8212.54760320.44190-0.592302.466001.44410K562NELFE
SYDE2ENSG00000097096.8361.92150204.974100.820102.480101.36870K562SF1
SYDE2ENSG00000097096.8337.52100204.729400.721204.257502.64330K562STAU1
SYDE2ENSG00000097096.8538.23640281.589100.934503.977602.13740K562SUPT6H
SYDE2ENSG00000097096.8178.64380314.99360-0.818203.908503.06010K562TARDBP
SYDE2ENSG00000097096.8188.65130303.83070-0.687503.125802.24750K562TIA1
SYDE2ENSG00000097096.8115.99420178.83990-0.624602.323701.46800K562TRIM56
SYDE2ENSG00000097096.8347.33620214.642900.694304.938603.75310K562WDR3
SYDE2ENSG00000097096.8492.59540277.041000.830203.187501.44660K562YTHDC2
SYDE2ENSG00000097096.8479.95240368.442500.381402.304001.52820K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYDE2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SYDE2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SYDE2 is not avaliable on ENCORE database.