SOD3

General Information

Gene Name       : SOD3
Gene ID             : ENSG00000109610.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOD3ENSG00000109610.50.000.000.00ENCSR000AEF
HepG2SOD3ENSG00000109610.50.070.000.04ENCSR985KAT
K562SOD3ENSG00000109610.50.090.070.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOD3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SOD3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SOD3 is not avaliable on ENCORE database.






NO known proteins are bound to SOD3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SOD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOD3 is not available on ENCORE database.

  • 28 RBPs can affect the levels of SOD3.  








The Knockdown/knockout RNA-Seq assay for SOD3 is not available on ENCORE database.





28 RBPs can affect the gene expression of SOD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOD3ENSG00000109610.515.727302.440302.688002.261901.63170HepG2CPSF6
SOD3ENSG00000109610.524.671504.623802.415603.655802.92570HepG2DNAJC2
SOD3ENSG00000109610.532.309204.284402.914704.696603.93550HepG2EIF2S1
SOD3ENSG00000109610.521.057404.711602.159902.196101.61520HepG2HNRNPA1
SOD3ENSG00000109610.518.710504.109502.186702.409401.83380HepG2PCBP1
SOD3ENSG00000109610.528.598303.514003.024603.227601.73050HepG2SF1
SOD3ENSG00000109610.537.862704.352203.120906.007605.19350HepG2SF3B4
SOD3ENSG00000109610.516.039802.576702.638002.252401.58890HepG2TARDBP
SOD3ENSG00000109610.541.3662016.766001.302802.186201.65450K562AQR
SOD3ENSG00000109610.56.6551024.79960-1.897802.360101.55990K562DKC1
SOD3ENSG00000109610.527.1421070.45770-1.376203.162901.80200K562EXOSC5
SOD3ENSG00000109610.5205.8912032.356902.6696024.3963021.56380K562FIP1L1
SOD3ENSG00000109610.528.6346067.08720-1.228303.121702.20830K562FMR1
SOD3ENSG00000109610.561.4848016.792801.872305.454603.96670K562HNRNPA1
SOD3ENSG00000109610.546.3953013.050401.829803.555802.88980K562HNRNPC
SOD3ENSG00000109610.512.5185045.23470-1.853404.103702.79070K562HNRNPL
SOD3ENSG00000109610.561.4704021.398101.522303.219701.99720K562MSI2
SOD3ENSG00000109610.5701.4989089.621002.9684057.2384053.99760K562PCBP3
SOD3ENSG00000109610.5470.3160068.732402.7745051.2106048.38220K562POLR2G
SOD3ENSG00000109610.548.2657022.854301.078402.096401.61120K562PUS1
SOD3ENSG00000109610.5122.9084061.273401.004203.728502.46680K562SAFB
SOD3ENSG00000109610.5139.5398028.098802.3120010.256707.19490K562SFPQ
SOD3ENSG00000109610.566.7136030.772201.116302.815401.87340K562SRPK2
SOD3ENSG00000109610.537.8484010.835501.804402.728001.68780K562SRSF4
SOD3ENSG00000109610.5141.2050078.222400.852003.609701.85830K562SRSF9
SOD3ENSG00000109610.592.4532019.110402.274309.115206.63840K562SUCLG1
SOD3ENSG00000109610.550.9375011.255902.177903.292302.26610K562TIAL1
SOD3ENSG00000109610.5130.8097065.157201.005403.636001.58290K562TRNAU1AP
SOD3ENSG00000109610.581.0079018.883102.100908.483006.84780K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOD3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SOD3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SOD3 is not avaliable on ENCORE database.